Lorenzo Cerrone retweetledi
Lorenzo Cerrone
21 posts
Lorenzo Cerrone retweetledi
The hackathon is organized by the BioVisionCenter ( @VirginieUhlmann , @lorenzocerrone, Ethel Mendocilla Sato & me), @nfdi4bioimage 's @notjustmoore , EMBL's @tischitischer, CEITEC's @VladimirUlman , @scalableminds 's @normanrz & @perlman
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It's a great pleasure to announce that "CellTypeGraph" has been accepted at #CVPR2022!
A new ML benchmark at the intersection between geometric learning and developmental biology!
Thanks to all for the support @athul_r_v @tejasvinee_m @PlantDevTUM @FredHamprecht @PlantMorphoDyn
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Lorenzo Cerrone retweetledi
So happy to see our work with @guijacquemet, @LaineBioImaging and @HenriquesLab in @naturemethods out! I believe the topic is specially relevant for the #BioImageAnalysis community: "Avoiding a replication crisis in deep-learning-based bioimage analysis".
nature.com/articles/s4159…
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Lorenzo Cerrone retweetledi
The explosive work of FOR281 members Hay & Tsiantis labs @mpipz_cologne on seed dispersal in Cardamine has been featured on @smartereveryday ! How cool 🌿💥
youtu.be/MUaTOoVmg1Q?t=…
paper: bit.ly/2TXz1uQ
YouTube
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Lorenzo Cerrone retweetledi
Always great to see such a thorough comparison for a real use case (spoiler: our @WolnyAdrian 's PlantSeg is doing pretty good)
Volodymyr Nechyporuk-Zloy@vnzloy
"Assessment of deep learning algorithms for 3D instance segmentation of confocal image datasets Anuradha Kar, Manuel Petit, Yassin Refahi, Guillaume Cerutti, Christophe Godin and Jan Traas bioRxiv. posted 10 June 2021, 10.1101/2021.06.09.447748 biorxiv.org/content/early/…
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Lorenzo Cerrone retweetledi
Our 3D ovules are out in eLife.
Thanks to all great collaborations. @RacheleTofanel1 @StraussSoe @RichardSmithLab @lorenzocerrone
@WolnyAdrian @PlantMorphoDyn
elifesciences.org/articles/63262
Kay Schneitz@PlantDevTUM
Couldn’t resist posting 😀. 3D digital ovules based on deep imaging, machine-learning-based 3D segmentation, and tissue annotation. Enables quantitative spatio-temporal analysis of cellular and gene expression patterns with cell and tissue resolution (2021 eLife 10:63262).
Freising, Germany 🇩🇪 English
Lorenzo Cerrone retweetledi
@UniHeidelberg (finally) featured PlantSeg our tool to segment plant cells in tissues.
uni-heidelberg.de/en/newsroom/an…
Publication: elifesciences.org/articles/57613
@lorenzocerrone @WolnyAdrian @PlantMorphoDyn
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Lorenzo Cerrone retweetledi
Pflanzenzellen mit 3D-Bildern analysieren: Heidelberger Wissenschaftler an Entwicklung neuer Bildverarbeitungssoftware beteiligt uni-heidelberg.de/de/newsroom/pf… #PlantSeg
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Lorenzo Cerrone retweetledi
So cool to study morphogenesis of a complex organ in full 3D and with cellular resolution.
Meticulous work by @athul_r_v and @RacheleTofanel1. Great collaboration with @StraussSoe, @RichardSmithLab, @lorenzocerrone, @WolnyAdrian, @ilastik_team, #FOR2581
biorxiv.org/content/10.110…
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Lorenzo Cerrone retweetledi
First ever 3D plant cell atlas of Arabidopsis ovules. Cheers to @RacheleTofanel1 @PlantDevTUM and other coauthors. Its never possible without support of #MGX team @StraussSoe @RichardSmithLab and #plantseg team @lorenzocerrone @WolnyAdrian and the @PlantMorphoDyn
bioRxiv Plant Bio@biorxiv_plants
A digital 3D reference atlas reveals cellular growth patterns shaping the Arabidopsis ovule biorxiv.org/cgi/content/sh… #biorxiv_plants
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Lorenzo Cerrone retweetledi
"Kinderstudie": preliminary results out now. Ca. 5000 children and one parent were tested in Germany's southwest. Out of these, around 60 had antibodies against SARS-CoV-2: klinikum.uni-heidelberg.de/newsroom/vorla… 1/3
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Lorenzo Cerrone retweetledi
After over over two intense months, our preprint on Sars-CoV-2 antibody testing is out. We measure antibody binding based on Immunofluorescence, using high-throughput microscopy and image analysis to make the approach scalable.
biorxiv.org/content/10.110…
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Lorenzo Cerrone retweetledi
Scientifically, this is new territory for us, but pixels are pixels everywhere, so it came together surprisingly fast. Many thanks to @CiidHeidelberg for giving us the opportunity to contribute to this important work.
Constantin Pape@cppape
After over over two intense months, our preprint on Sars-CoV-2 antibody testing is out. We measure antibody binding based on Immunofluorescence, using high-throughput microscopy and image analysis to make the approach scalable. biorxiv.org/content/10.110…
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Lorenzo Cerrone retweetledi
Chances are you know this already, but we think it is a VERY nice and concise video about Corona Virus infection and what the world experiences in this very moment. youtu.be/BtN-goy9VOY @Kurz_Gesagt
YouTube
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Lorenzo Cerrone retweetledi
VOLUNTEERS: The German Center for Infection Research (dzif.de/en) contacted us. They forwarded requests they have received from German hospitals and MDs.
Check it out, and see if you can help: discourse.data-against-covid.org/t/request-for-… #COVID19 #HELP #VOLUNTEERS
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Lorenzo Cerrone retweetledi
Plant Science Research Weekly: plantae.org/plant-science-… Cotton genomics, Selaginella expression map, Primary vs lateral root responses, reciprocal cybrids, effect of herbivory on temp responses, PlantSeg for 3D image segmentation, and mitigating As in urban gardens.
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Lorenzo Cerrone retweetledi
It's not ilastik, but it's still ours. If you need membrane-based segmentation for LM, check it out! Really fun collaboration with @AlexisMaizel and other great people who study plant morphodynamics plantmorphodynamics.com
bioRxiv Plant Bio@biorxiv_plants
Accurate And Versatile 3D Segmentation Of Plant Tissues At Cellular Resolution biorxiv.org/cgi/content/sh… #biorxiv_plants
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