Rasim Barutcu
1K posts
Rasim Barutcu
@rassobar
Associate Director @ ScitoVation Transcriptomics, Toxicogenomics, Risk Assessment, Chromosome Biology, Epigenetics, RNA Biology
Katılım Şubat 2016
970 Takip Edilen702 Takipçiler
i thought the figure was ok, but since the png is transparent (why!?!) it looks terrible in dark mode. Here is a better version
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Excited to share this preprint that describes my latest work on using GPUs to accelerate processing of RNA-seq data.
The title says it all: "RNA-seq analysis in seconds using GPUs" now on biorxiv biorxiv.org/content/10.648…
Figure 1 shows they key result
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A smart approach to study CTCF regulation: nature.com/articles/s4146…
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Great work! Congrats Sheq!
SheqLab@ShechnerLab
It's my pleasure to present the next big preprint from SheqLab! An exciting application of our O-MAP platform that I hope will transform the study of nuclear architecture. If you've ever wanted to dissect the subnuclear "neighborhood" around an individual locus, read on! (1/30)
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Glad to have contributed to this work! Great insights on inter-chromosomal interactions…
👇🏻👇🏻👇🏻
Philipp Maass@NucleomeHunter
🚨Inter-chromosomal contacts (‘kissing chromosomes’) organize human genome topology along a spatial gradient of genome activity (62 Hi-C datasets). Check rdcu.be/dZYQw, @NatureComms, @4DNucleome, @The3DGenome, @humangenomeorg, @netscisociety, @Emblebi, @MoGen_Grads
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Introns? Splicing? Anyone? Take a sip.. or a gulp:
science.org/doi/abs/10.112…
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I haven't been tweeting for a while, but I think this is worth breaking the silence...
Context transcription factors establish cooperative environments and mediate enhancer communication
by @BartDeplancke and his team.
nature.com/articles/s4158…
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What is happening?! Nuclear RNA forms an interconnected network of transcription-dependent and tunable microgels is happening... biorxiv.org/content/10.110…
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mRNA secondary structure prediction using utility-scale quantum computers
arxiv.org/abs/2405.20328
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Rasim Barutcu retweetledi
Horizontal transmission of functionally diverse transposons is a major source of new introns biorxiv.org/cgi/content/sh… #biorxiv_genomic
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@tangming2005 Even better: "The code has been uploaded to the Github repository (github.com/code)" ... and then...
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Rasim Barutcu retweetledi
The "lncRNA" Malat1 is trafficked to the cytoplasm as a localized mRNA encoding a small peptide in neurons pubmed.ncbi.nlm.nih.gov/38688681/
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Rasim Barutcu retweetledi
How do enhancers work over distances that sometimes exceed megabases? Excited to share our work led by @gracecbower where we uncover a unique sequence signature globally associated with long-range enhancer-promoter interactions in developing limb buds: biorxiv.org/content/10.110… 1/
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Rasim Barutcu retweetledi
Excited to share with the single-cell community the most recent work of @tmontsay and @AEsteveCodina from @cnag_eu, something we think will be a game-changer in #scRNAseq quality control: biorxiv.org/content/10.110… @biorxivpreprint
Get ready for the tweetorial!
1/10
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Rasim Barutcu retweetledi
Rasim Barutcu retweetledi
Our most recent preprint on #DeltaSplice for quantitative prediction of splicing and splicing-altering mutations. Great collaboration with Tao Jiang Lab. Led by Chencheng Xu@Jiang lab and a former postdoc @BaoSuying in my lab. Software available soon-stay tuned! biorxiv.org/content/10.110…
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Branched chemically modified poly(A) tails enhance the translation capacity of mRNA
nature.com/articles/s4158…
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