Sebastian Bauer

26 posts

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Sebastian Bauer

Sebastian Bauer

@sebjbauer

PhD Student 🔬 | Bridging SMLM, Machine Learning, and Immunology 🦠 💻 | Chasing Adventures in Endurance Sports, and the Outdoors 🚴‍♂️⛰️⛷️

Stockholm University Katılım Mayıs 2019
310 Takip Edilen59 Takipçiler
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Sebastian Bauer
Sebastian Bauer@sebjbauer·
Hey! I'm Sebastian Bauer, starting my PhD journey in @GriffieJuliette's lab. My focus? Unraveling the secrets of cellular networks using GNNs and SMLM. 💻🔬🦠 Can't wait to dive into discussions about biophysics, machine learning, and microscopy. 🧬🤖
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Matteo Tadiello
Matteo Tadiello@tadi_hello·
Antibody–antigen complexes are still hard for AlphaFold: good candidate structures may be generated, but choosing the correct one remains a challenging. ABAG-Rank tackle this by learning to rank structural ensembles. Paper: biorxiv.org/content/10.648… Code: github.com/tadteo/ABAG-Ra…
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Abberior
Abberior@Abberior·
🎉 New paper out in Nano Letters! This study demonstrates how our abberior tetrazine dyes (STAR 635, STAR RED) enable precise bioorthogonal labeling and STED imaging. By combining noncanonical amino acid (ncAA) incorporation with bioorthogonal click chemistry and expansion microscopy (ExM) the team achieved nanoscale resolution of protein distributions in cells, going beyond the limits imposed by traditional antibody labeling. pubs.acs.org/doi/10.1021/ac… Always exciting to see our dyes supporting cutting-edge super-resolution research. Congratulations to the author team around Hans Blom, Hjalmar Brismar, and Steven Edwards. @scilifelab #STED #Superresolution #ExpansionMicroscopy #bringingcolortoscience
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juliette.griffie
juliette.griffie@GriffieJuliette·
⚠️ Last couple of days to apply for a PhD position at CMCB!! Join us 😀 su.varbi.com/en/what:job/jo…
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juliette.griffie@GriffieJuliette

🚨🚨 We are recruiting! If you are interested in developing ML tools (with a focus on interpretable ML & generative AI) for bioinformatics applications @scilifelab, look no more😋 1 PhD position su.varbi.com/en/what:job/jo… & 2 post doc positions (online soon, PM me in the meantime).

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juliette.griffie
juliette.griffie@GriffieJuliette·
It has been a bliss of a 1st year for the lab with these guys 🥰🎂 looking forward to sharing what we have been up in the coming months 😆 and, of course, a merry Christmas 🎄🎁
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Luca Panconi
Luca Panconi@LucaPanconi·
🚨 Exciting news – my final Birmingham paper, “Mapping membrane biophysical nano-environments”, is now available online and open access with @NatureComms! (1/4) doi.org/10.1038/s41467…
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Sebastian Bauer
Sebastian Bauer@sebjbauer·
first publication out of the CMCB lab! If you want to know more about how you can use Machine Learning in Microscopy, this review is your guide! 😃🔬🤖
Inês Cunha@inesmcunha

😍⚠️And it’s out in @J_Cell_Sci!! Our review on the opportunities and challenges of using Machine Learning in Microscopy research 🤖🔬! From using ML to curate data to using ML to give us more KNOWLEDGE about our data (i.e. Interpretation 😉) DOI: doi.org/10.1242/jcs.26… (1/n) ⬇️

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juliette.griffie
juliette.griffie@GriffieJuliette·
📢📢The one and only @inesmcunha will be presenting the super exciting work she has been doing since joining the lab in collaboration with @CultureOfCells @TheCrick (Poster 50, talk on Friday) at I2K. [1/2]
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juliette.griffie
juliette.griffie@GriffieJuliette·
Back at work after a couple of months off for baby n2. Super happy to see these fantastic four 🦸‍♀️🦸‍♂️, but mixed feelings leaving my little shrimp behind🐣.
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Inês Cunha
Inês Cunha@inesmcunha·
Celebrating my first ever "Manuscript Accepted" Email 🎉♥️ (earlier this week). Feels good 😋
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Sebastian Bauer
Sebastian Bauer@sebjbauer·
Back in my hometown to attend my first conference @icmlconf. I'm excited to learn & discuss about graph neural networks and their applications in imaging and biology! 🔬💻🧬 #ICML2024
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Inês Cunha
Inês Cunha@inesmcunha·
Yesterday I had a blast giving a lecture at the "AI Applications in Infection Biology" course (@NDPIAprogramme) on how we can go from “pretty pictures” to novel knowledge in immunology with AI🔬🦠 First time showing off what we’re up to in the lab!!❤️ Big thanks to everyone!
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Inês Cunha
Inês Cunha@inesmcunha·
Hey everyone!😛Need your help. I’m preparing an image analysis lab as an introduction of using ML for cell classification. Do you know of any available Jupyter Notebooks using public (labelled!) datasets for cell classification (with simple model architectures – CNN-based)?? TY❤️
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Keşfet

@scilifelab @biorxivpreprint @sheffielduni @inesmcunha @GriffieJuliette @NatureComms @CultureOfCells @TheCrick