shristi

Very grateful to be part of this great collaboration to understand aging in beta cells. Congrats to all authors.

Nucleosomes move and slide during aging. Possibly restore regulators of nucleosomes positioning in aging. Very interesting talk by Jason Buenrostro. #singlecellgenomicsday

Pleasure to have worked with @ArrojoeDrigoLab on this. I still think the beta cell cluster should have been colored in red (❤). Thanks to @MattACottam1 and @shr9st9 for their hard work on this project.

Please check out our summer 2023 newsletter at t.e2ma.net/webview/sxxqfi…. If you aren't subscribed to our email list, you can do so via app.e2ma.net/app2/audience/…. Stay cool!

Happy to have helped Sheila Collins' group at @VUMCResearch, with bulk RNA-Seq analysis. Now in print 👇

Single cell RNAseq dataset of ~45K cells profiled from human pancreatic islets (5 healthy donors) published by @shr9st9 and colleagues in JCI Insight (2021) now available as seurat object at zenodo.org/record/7626110! #OpenScience #pancreas #bioinformatics

Check out my 1st author #ArticleInPress from @AJPEndoMetab @APSPhysiology! ow.ly/ZCim50MEKQe Thanks to our co-authors, collaborators, and the human donors themselves for making this work possible. #AJPEndoMetab #type1diabetes #diabetes #nervefibers #bloodvessels #islets

@vandydata @powersac_TN Congratulations to all authors journals.physiology.org/doi/abs/10.115…

CDS is proud to have helped out on Tiffany Richardson et al's work, recently published out the @powersac_TN lab!

📢 CDS' winter newsletter is out! t.e2ma.net/cshare/inbound…

Forgot to mention the addition of the SCENIC service, cds.vanderbilt.edu/services/sceni…. From single cell gene expression data, cis-regulatory analysis can be exploited to guide the identification of transcription factors and cell states, like shown here (#F4" target="_blank" rel="nofollow noopener">science.org/doi/10.1126/sc…):

Updates posted to CDS' website - cds.vanderbilt.edu - new paper added, CUT&RUN service added, added accordion UI to FAQ, added new FAQ entries, & other trivial improvements.

Busy week! @MattACottam1 joined CDS this week 😸 and is already deep in the weeds, another collab paper (@VGamaLab) was published, and now the CDS website has been refreshed to capture this progress. Check it out at cds.vanderbilt.edu. Of note is our most important metric 👇

@chandra_mhrjn @Cancers_MDPI Congratulations!

Happy to announce that our review discussing the role of natural and synthetic estrogens in chronic inflammation and breast cancer is out. mdpi.com/1431740 #mdpicancers via @Cancers_MDPI

CDS is recruiting! Please check out our work via cds.vanderbilt.edu/papers-and-byt… and if interested, please apply via ecsr.fa.us2.oraclecloud.com/hcmUI/Candidat…

Explore this gene expression data in the shiny app here powersbrissovalab.shinyapps.io/scRNAseq-Islet…

Happy to share this work from Powers Brissova research group. Feel grateful to all co-authors and colleagues. "Combinatorial transcription factor profiles predict mature and functional human islet α and β cells" insight.jci.org/articles/view/…

Turn on your 🧠 and check out these great "primers" on popular methods we read about all the time, but may not always understand fully. Great way to get the basics without falling in too deep! nature.com/nbt/articles?t… #data #sciencefactsamazing #Bioinformatics

Updates to our website now live at cds.vanderbilt.edu, including new papers we've been contributed to! New services coming soon...

The triumphs and limitations of computational methods for scRNA-seq | Nature Methods nature.com/articles/s4159…

@barunlz Congratulations!

Fresh off the Press! Six years of work, one book!!!