🌟 Features include annotations by UniFIRE (UniProt's automated function prediction system), AMR, biosynthetic gene clusters
🦠 Can be used on novel & known species
💻 Try it out: github.com/EBI-Metagenomi…
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Tatiana Gurbich
42 posts
Tatiana Gurbich
@tgurbich
Bioinformatician at EMBL-EBI | PhD in Integrative Biology from UC Berkeley | Metagenomics, bioinformatics, evolutionary biology
Cambridge, England Katılım Ağustos 2020
82 Takip Edilen71 Takipçiler
Our paper describing mettannotator, a new prokaryotic annotation pipeline, is out: academic.oup.com/bioinformatics…
📝 Mettannotator generates comprehensive structural & functional annotations
⚙️ Built with #Nextflow — scalable, no installation needed
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Tatiana Gurbich retweetledi
Join our #webinar next week to discover MGnify Proteins, a new data resource for proteins identified through metagenomic analysis. Registration is free but essential: ebi.ac.uk/training/event… #Bioinformatics #DataScience #Webinar #microbiome @MGnifyDB #metagenomics @emblebi
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Excited to present our work on MGnify genome catalogues at #ISME19 Tuesday afternoon. We are up to ~0.5 million genomes and ~30k species across 12 biomes. Stop by to chat all things MAGs if attending.
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Tatiana Gurbich retweetledi
Just a few days left! Apply by 9 June for this virtual course at @MGNifyDB and learn more about the tools, processes and analysis approaches used in genome-resolved metagenomics: ebi.ac.uk/training/event…
#metagenomics #genomics #virtuallearning
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Tatiana Gurbich retweetledi
Presenting MGnify Genomes' new catalogue comprising 112,951 genomes (2,847 species level clusters) derived from public mouse gut datasets with contributions from
@SilasKieser, @StrowigLab, @PedicordLab, generated as part of our work with @MRCMouseNetwork. ebi-metagenomics.github.io/blog/2024/03/0…
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Tatiana Gurbich retweetledi
Interested in learning about methods to study microbiomes in relation to human health and diseases? Learn it from @alexmsalmeida in our next week’s #webinar. Registration is free but essential ebi.ac.uk/training/event… #datascience #bioinformatics #microbiology #metagenomics
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Tatiana Gurbich retweetledi
Job alert! I have an open postdoc position in my team @CamVetSchool @Cambridge_Uni to expand our research on the human #microbiome and explore multi-kingdom signatures of health and disease. More info and application here: jobs.cam.ac.uk/job/44870/. Please share and RT.
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Please spread the word to colleagues in Thailand and Asia who are interested in metagenomics.
Last-minute registration is still available for our workshop in Bangkok on August 11th.
MGnify@MGnifyDB
@MGnifyDB is excited to be offering a day-long hands-on workshop in Bangkok, Thailand on August 11th. This a unique opportunity to meet and train with the MGnify team outside the UK and learn about the MGnify platform and metagenomic data analysis.
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Tatiana Gurbich retweetledi
MGnify will be attending GSC23 in Bangkok in August - @robdfinn, @tgurbich and Lorna Richardson will be sharing their insights on genome-resolved metagenomics, including a dedicated MGnify workshop. Register in the link below!
GSC@genomestandards
Interested in learning more about @MGnifyDB ? Sign up for the MGnify workshop at GSC23 genomicsstandardsconsortium.github.io/GSC23-Bangkok/…
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Tatiana Gurbich retweetledi
Tatiana Gurbich retweetledi
Tatiana Gurbich retweetledi
Interested in microbiome research? Join us for the upcoming SEQanswers webinar and hear from experts in the field on the latest techniques and applications. Register now! #microbiome #sequencing #NGS #research workcast.com/register?cpak=…
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@MariiaABeliaeva @AcademicChatter If you select "Following" rather than "For you" at the top of the feed page, you should only be seeing your actual feed. Unless you are trying to discover new accounts and want a better targeted "For you" page, then I don't know :)
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Alright @AcademicChatter, here is a question:
I’m trying to build a professional sci profile here, following scientists and journals, but my feed 80% consists of memes, cats and Pedro Pascal as.. tweets. Am I doing something wrong? 🤔 Not that I don’t like it but…
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Tatiana Gurbich retweetledi
Are you a web developer with an interest in biology, especially the exciting field of #microbiome. We are looking for another developer to join the @MGnifyDB team @emblebi to improve and expand the website as we grow. Find out more here embl.org/jobs/position/…
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Tatiana Gurbich retweetledi
Applications are now open for 2023's #metagenomics #bioinformatics course.
Learn about the tools, processes, and analysis approaches used by @MGnifyDB in the field of #genome-resolved metagenomics.
Location: @emblebi
Course dates: 9 – 13 October
Applications close: 25 June
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The resource is actively growing with new data coming soon. Follow @MGnifyDB to get updates on MGnify Genomes. 6/6
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We provide a protein and a gene database with each catalogue to aid in sequence analysis and functional characterisation of organisms in the catalogues. Metadata tables give detailed information on each genome, incl. quality, assembly stats, sample and geographic origin. 5/6
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So happy to see this out 🥳. Our team has been developing MGnify Genomes for the past few years, building upon the work @alexmsalmeida et al did to generate the human gut genome catalogue. The resource already includes over 300k bacterial and archaeal genomes from 7 biomes. 🧵1/6
MGnify@MGnifyDB
We are excited to share the first paper describing our genome catalogue resource, MGnify Genomes: doi.org/10.1016/j.jmb.…
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