Snitkin Lab
54 posts
@SnitkinLabWGS
We apply genomics to understand the epidemiology and evolution of resistant pathogens.
regentrans ncbi.nlm.nih.gov/pmc/articles/P… @SnitkinLabWGS Snitkin Lab presents framework for studying regional pathogen transmission using whole-genome sequencing data, & corresponding open-source R package, regentrans,
First post COVID PhD defense with at least some in person. Congrats soon to be Dr Stephanie Thiede and her mentor Evan Snitkin!
So excited our newest preprint from @SnitkinLabWGS & @mhayde2 is up! We used a SNV threshold free method to integrate #WGS and #Epi data to identify routes of #CRE transmission in an LTACH. #epitwitter #Genomics medrxiv.org/content/10.110…
My third thesis paper with the @SnitkinLabWGS is out today! We originally began this project so that we could implement @MahaFarhat & @bjesseshapiro's phyC algorithm in R for one of our Cdif genomics projects. 1/4
Congratulations Dr S Hawken PhD!!! @5hawnsolo @SnitkinLabWGS
New paper by @anishpandey89 in @NatureComms from the Read group at @UoS_Medicine and @SouthamptonBRC with me, @MaidenLab @XavierDidelot @NoMoreMrNEISGuy + others go.nature.com/2Q14Dfa "Microevolution of N. lactamica during controlled human infection"
