Martin Hemberg

432 posts

Martin Hemberg

Martin Hemberg

@m_hemberg

Computational biologist. Scrabble addict. Crossfit junkie.

Boston, MA เข้าร่วม Temmuz 2015
147 กำลังติดตาม1.3K ผู้ติดตาม
Martin Hemberg รีทวีตแล้ว
Luca Pinello
Luca Pinello@lucapinello·
Please RT! We are hiring Research Scientists/Postdoctoral Candidates/Computational Biologists and Programmers excited about computational challenges in modeling biological data coming from #CRISPR genome editing and #singlecell experiments. careers.iscb.org/jobs/view/7780
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Martin Hemberg
Martin Hemberg@m_hemberg·
Now that I am allowed back in the office I am proud to announce my first contribution to the Evergrande center lunch room. This key piece of hardware will likely improve productivity by 0.000001%
Martin Hemberg tweet media
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Martin Hemberg
Martin Hemberg@m_hemberg·
Grateful to have been able to contribute to this fantastic paper. VASA-seq really takes single-cell analysis to a new level as it allows you to profile transcripts and splicing events rather than just genes.
Anna Alemany@annionna

Excited to share VASA-seq online, scRNA-seq providing full gene body coverage & non-coding RNA expression From @AlexandervanOu1 @hollfelderlab @m_hemberg labs, big thanks to @JoachimDeJonghe @ge_parada @AMartinezArias and F.Salmen for the fun dicussions! biorxiv.org/content/10.110…

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Martin Hemberg
Martin Hemberg@m_hemberg·
The first part of a very fascinating investigation of sequences that normally do not exist in genome is out in @GenomeBiology @NadavAhituv @IGeoso @YizharOfer @i_mouratidis
Nadav Ahituv@NadavAhituv

Characterization of nullomers and nullpeptides, short 11-15bp or 4-7aa long sequences missing in the genome & proteome, in various functional units and 30 genomes. Great work by @IGeoso, @YizharOfer, Ioannis Mouratidis and collaboration with @m_hemberg. genomebiology.biomedcentral.com/articles/10.11…

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Martin Hemberg
Martin Hemberg@m_hemberg·
@sbarnettARK @NadavAhituv @IGeoso @YizharOfer Another astute observation, and one of the reasons why the method is very computationally efficient requiring only a single pass over the fastq file. We only look for the neomer sequences and no references are involved.
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Charles Roberts
Charles Roberts@CCRobertsARK·
@NadavAhituv @m_hemberg @IGeoso @YizharOfer Another thing I like about this approach is that you ostensibly can be reference agnostic. I understand this method doesn't require mapping to a reference, which could make it easier to standardize lab-to-lab as some are on 37 and others are on 38.
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Charles Roberts
Charles Roberts@CCRobertsARK·
@NadavAhituv @IGeoso @YizharOfer @m_hemberg Interesting! One question, given that we just added 200 Mbp of novel sequence to the human genome via the T2T—how can we be sure these sequencers are ‘new’? Will read the print tonight, maybe the answer is in here.
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Martin Hemberg
Martin Hemberg@m_hemberg·
This was a bit of an upside-down project. Unlike many other collaborations with experimentalists, here we first spent a lot of time doing computational work before @YizharOfer was able to go into the lab and test our predictions
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Martin Hemberg
Martin Hemberg@m_hemberg·
Apply! Apply! Apply! Apply here bit.ly/3ugWumQ for a 3 year computational postdoc position in my group
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Martin Hemberg
Martin Hemberg@m_hemberg·
And even bigger apologies to @DerRiehl whose twitter handle I for some reason could not find 👀
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Martin Hemberg
Martin Hemberg@m_hemberg·
There is an opening in my group for a quantitative or computational genomics post-doc. If you are interested, please contact me at mhemberg funny-looking-a bwh.harvard.edu. Candidates with CS, maths, physics or bio backgrounds are all encouraged. Please RT
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ค้นพบ

@ericmiskalab @DerRiehl @talandrews @sterding @ilyakorsunsky @JoachimDeJonghe @ge_parada @GenomeBiology