Doc Edge

3.3K posts

Doc Edge

Doc Edge

@DocEdge85

Assistant professor in quantitative and computational biology @USC. Genetics, evolution, and a bit of statistics.

شامل ہوئے Kasım 2015
2.8K فالونگ4.4K فالوورز
Doc Edge
Doc Edge@DocEdge85·
@ras_nielsen I got one of these a few weeks ago! But they've upped their price from $80k
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Rasmus Nielsen
Rasmus Nielsen@ras_nielsen·
Bribery to accept graduate students has now been formalized through a company that will help facilitate the transaction.😳
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Doc Edge
Doc Edge@DocEdge85·
@mbeisen Most Thursdays, the 405 doesn't go through downtown
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Doc Edge@DocEdge85·
@vsbuffalo Everywhere in the country has mission-style burritos (unfortunately)---they're at chipotle!
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Vince Buffalo
Vince Buffalo@vsbuffalo·
If Seattle had Mission-style burritos, more breakfast sandwich/diner spots, and a good Jewish deli, it would be a near-perfect culinary city.
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Vince Buffalo
Vince Buffalo@vsbuffalo·
I’ve said many times Seattle’s Mexican food doesn’t come close to California’s. But after trying Frelard Tamales in Fremont yesterday, I admit I was impressed. If only I could find a burrito that good.
Vince Buffalo tweet media
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Mark Chaisson
Mark Chaisson@mjpchaisson·
Happy to announce our paper on a new genotyping algorithm, ctyper. nature.com/articles/s4158… . This is amazing work by Walfred Ma, someone you will want to keep on your radar for future contributions to science.
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Sasha Gusev
Sasha Gusev@SashaGusevPosts·
Murray and most of race twitter has apparently been fooled by this completely fabricated analysis purporting to show African ancestry is associated with IQ. People lie on twitter all the time, but this is both more revealing and more disturbing than usual. A 🧵
Charles Murray@charlesmurray

Proposition: Everything that has been learned about the nature of the B/W difference in the subsequent 56 years of research is consistent with Jensen’s expectations in 1969. I stand ready to be corrected.

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Doc Edge
Doc Edge@DocEdge85·
@the_mel_jar I've always thought of him as a young Val Kilmer. Smokeshow either way though
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Mel
Mel@the_mel_jar·
Clearly, it’s what we all see in the ink blot of his face.
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Mel
Mel@the_mel_jar·
Male psychiatrists and psychoanalysts, what’s stopping you from looking like Hermann Rorschach, AKA the OG Brad Pitt?
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Debbie Kennett 🧬🌳
Debbie Kennett 🧬🌳@DebbieKennett·
Another genetic genealogy case from the US where the FBI used the MyHeritage DNA database without the consent of their users. The prosecution are also refusing to provide discovery of the relevant information. masslive.com/news/2025/08/f…
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Doc Edge
Doc Edge@DocEdge85·
@pschofie79 yeah but I'm not reading that Cronin excerpt unless Cronin has read Lucian of Samosata
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Sasha Gusev
Sasha Gusev@SashaGusevPosts·
This is a really good lay article on embryo selection but IMO is overly credulous of risk reductions that emerge as a consequence of statistical assumptions rather than actual disease etiology. The disease model *really* matters ...
Sasha Gusev tweet media
Shai Carmi@ShaiCarmi

@anshulkundaje @SashaGusevPosts Here's our magazine article (w/ @ToddLencz): aeon.co/essays/embryo-… It's not paywalled, language as accessible as possible, very balanced based on the latest research as of writing.

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Ari Schulman
Ari Schulman@AriSchulman·
People still think "Gattaca" is just a fairy tale, because a eugenic dystopia must be something imposed on us rather than something we all voluntarily choose.
Crémieux@cremieuxrecueil

The latest embryo selection company is live, and guess what: They're publicly letting people select for IQ! If you want to see what they can do for your family for a variety of traits, go check out their website where they've got a calculator app available.

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Hakhamanesh Mostafavi
Hakhamanesh Mostafavi@Hakha_Most·
I'm thrilled that my lab at NYU is now supported by an NIH MIRA grant! I'm looking to hire 1-2 senior lab members (outstanding postdoc candidates or experienced staff scientists) with expertise in computational and statistical methods in human genetics or genomics. Please share!
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Doc Edge
Doc Edge@DocEdge85·
One of my favorite categories of thing is "guy decides to spend decades on an insane, idiosyncratic, solo art project of staggering scope". Other entries include the Watts Towers, Coral Castle, Forestiere Underground Gardens, Le Palais Ideal
“paula”@paularambles

this guy spent 21 years building a miniature version of nyc consisting of almost a million buildings, the full model is 50 feet long and 30 feet wide, and he first announced it on tiktok like this:

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Doc Edge@DocEdge85·
@AlexTISYoung So sorry to hear it's back. Here's hoping that you're cured at the end of this next round
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Alex Strudwick Young
Alex Strudwick Young@AlexTISYoung·
Cancer is back. My latest scan (a PET-CT) revealed a 1cm lesion in a lymph node of my liver. Unfortunately, it is not in a favorable position for surgical resection or standard ablation because of its proximity to an artery. They're starting me on infusions of irinotecan and vectibix this week, with four infusions every two weeks planned. This is different from what I had last year (oxaliplatin and xeloda). Vectibix is a monoclonal antibody that is indicated for me because my tumor is RAS-wildtype and was originally a left-sided rectal tumor. Cancer seems to be way ahead in terms of personalized medicine compared to other areas. This will be followed by some kind of procedure, either radiation or histotripsy or possibly surgery depending on the response to chemotherapy. I like the sound of histotripsy, a novel non-invasive technique that uses high-frequency sound waves to mechanically turn an area of cells into a kind of mush. It's a bit demoralizing going back onto chemotherapy infusions, but hopefully I'll be cured for good at the end of this. Although maybe not...who knows.
Alex Strudwick Young@AlexTISYoung

In March last year, at the age of 35, I was diagnosed with advanced stage III rectal cancer with a metastasis in my liver. This was a shock: I had no family history, and none of the doctors suspected it. In fact, I'd had a negative occult blood test when I went to ER with severe digestive symptoms a few months before. The first lesson I learnt from this was that there's no substitute for the proper diagnostic procedures: if you have any bleeding, get a colonoscopy, even if you don't have family history. I was treated with total neoadjuvant therapy at UCLA. I had 6 weeks of combination radiation and chemotherapy (Xeloda). The photo shows me after completing that first step of my treatment along with my parents in Yosemite. My mother has already survived two breast cancers, and my father had recently had a knee replacement (at the age of 70), so getting all three of us to the top of Sentinel Dome felt like an achievement. The chemoradiation was followed by 6 rounds of combination chemotherapy: oxaliplatin infusions followed by two weeks of Xeloda. I tolerated this unusually well. During this period, I managed to hike up to over 11,000ft multiple times in the Sierras, and I wrote the main text of a 72 author meta-analysis paper and submitted it to Nature where it has passed first round reviews (currently working on revisions). I showed a good clinical response, with the tumor in my rectum nearly completely disappearing and the liver metastasis shrinking substantially. At the end of October I had surgery: I was under for 9 hours, and they cut out a large bit of my rectum, 1/3rd of my liver, and gave me a temporary ileostomy. Waking up from this was probably the strangest experience of my life: I felt more machine than man, and I had wild hallucinations form such a large dose of anesthesia. It took a while to feel OK after that surgery. However, I still had the ostomy. I had that reversed at the end of January in another surgery, which took a greater toll on me than I expected. There's a cumulative effect of having so many major medical interventions, and it reveals anything weak in body or mind. Surprisingly, my mind held up well during this process. This was thanks to the love and support I received from friends and family and the great care I received from UCLA — in particular Dr Anand (medical oncology), Dr Kazanjian (colorectal surgery), Dr Agopian (liver surgery), and the radiation oncology team. I only just started to feel like I was starting to feel OK again and I got bad news: I got a positive circulating tumor DNA test (ctDNA), the signatera test from natera. Unfortunately, the second test I had done recently showed the level of ctDNA in my blood is increasing. This means disease recurrence is almost certain, likely within a year from the first positive test. Since then I've been put on celecoxib based on recent data indicating this can reduce risk of disease recurrence, although it doesn't seem to agree to well with my digestion. I've had CT, MRI, colonoscopy and there's been nothing to see, but it's only a matter of time. My oncologist thinks it is very likely (90%+) that it will be a local recurrence in my liver, which should be fairly easy to cure. But there's a small chance it is something worse, even potentially incurable. This is the reality of cancer for many patients: years of uncertainty. It's still not clear why this happened. Genetic testing returned nothing. My polygenic risk score (PRS) — something close to my own research — gave me totally average risk, at least according to 23andMe. I've always been slim, fit, eaten a pretty healthy diet. I was even raised vegetarian by hippy parents. I probably drank and partied more than is medically advised, but nothing extreme. However, there's been a well-documented uptick in cases like mine. A recent paper indicated this may be due to colobactin, a bacterial mutagen associated with E. coli among other bacteria. I may look at my Tempus tumor data to see if the somatic mutation in the APC gene they found (the only driver mutation) has a signature matching colobactin. If anyone knows anyone with a worthwhile expert opinion on how to manage my situation I'd be interested to hear!

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Sam Adler-Bell
Sam Adler-Bell@SamAdlerBell·
I am, personally, back in the New York groove
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Zena Hitz
Zena Hitz@zenahitz·
@Scholars_Stage @whynotqat We do read eg some more or less contemporary biology, but even if we did a lot more, it wouldn't amount to training in biology.
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T. Greer
T. Greer@Scholars_Stage·
There should be more universities like St. John's. I do not mean their specific great books curriculum so much as their commitment to a completely distinct curriculum that bares no resemblance to the standard American university model.
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