Alexis Lucattini

@delagoya @BioContainers And now this registry has been deleted? Where was the announcement on this??

Really excited to announce this one - we've been working with the @BioContainers group to make all of their images available on ECR Public Gallery. This means that bioinformatics containers will not be subject to throttling on AWS. Nice. aws.amazon.com/blogs/hpc/bioc…

As part of the Common Workflow Language (CWL) conference this year , @Lexisomes and I'll be conducting a CWL novice tutorial training workshop (APAC region) next week. Register below if you're interested and/or please retweet. Workshop Signup: forms.gle/FeFmX8MuxfqiDv… @commonwl

Not too late to sign up for CWLConf 2023! survey.bio-it.embl.de/614492 I'll be in Session 2 (EMEA-APAC) Wed 1 March and Session 3 (APAC-Americas) Friday 3 March. Learn how we're using CWL Expressions at @UMCCR for running workflows on @illumina's Connected Analytics Platform.

. @bitly I want to update the destination URL to ONE of my links. I use this service about one per year. How do I do this without paying $96?

"Writing Advanced CWL JS Expressions in TypeScript" Presenter: Alexis Lucattini @Lexisomes (University of Melbourne Centre for Cancer Research) cwl.discourse.group/t/writing-adva…

New release! @MultiQC version 1.14 just hit the shelves, and it's a big one! 🎉 Massive thank you to everyone who contributed (there were a lot of you!) 🙇🏻‍♂️ github.com/ewels/MultiQC/… Here's a short thread covering some of the highlights.. 🧵

🎵 It's going down (it's going down) 🎵 I'm yellin' Twitter!

@elonmusk ...which in other words is

Please note that Twitter will do lots of dumb things in coming months. We will keep what works & change what doesn’t.

@rougeneuron @2daeeun @LinuxHandbook Not if you do what all the cool kids are doing these days which is "alias rm='sudo rm'"

Scare a Linux user in less than 3 words 🐧👻

@multimeric @github Thanks, that's actually super useful!

@Lexisomes @github sleep 12h && gh issue create --repo 'owner/repo' --body 'some_message' --title 'some_title'🤷

Is it possible to delay the submission of a @GitHub issue until 9am the next business day to make it look like the submitter has a healthy work-life balance? ...asking for a friend I also think this would be a useful feature for reducing notifications outside of business hours.

@StevePriceMedia @AusTodayListnr In the context of Andrew Thornburn: 'Should your private religious beliefs affect your employment?' Wasn't private, he was on the board of the church. 'Should your prospective employer be able to ask you about your religious beliefs?' Didn't have to. It was on his LinkedIn

Should your private religious beliefs affect your employment? Should your prospective employer be able to ask you about your religious beliefs?  @AusTodayListnr

@PhilippBayer Rise of container software, docker and the HPC friendly singularity and the automation of bioinformatics software being added as stand-alone images to container repositories like quay.io/biocontainers has also been a big help! I can pull an image down locally and just run it!

@patricklmead Hi Patrick, can you send me through a gist of your code so I can reproduce this? What ruamel method are you using to read the yaml file? And what version of ruamel are you using?

@Lexisomes Hi Alex Thank you for the article. It appears that ruamel doesn't preserve comments if it reads the yaml from a file. The examples in your article used a string as input. Is my understanding correct? I'll read the ruamel source next but my initial tests seem to confirm this.

A write up on writing up yaml files in python: @awlucattini_60867/writing-yaml-files-with-python-a6a7fc6ed6c3?source=friends_link&sk=d7421660e2c27ab16c92cb362eed2002" target="_blank" rel="nofollow noopener">medium.com/@awlucattini_6…

@flaviaerius Reason I ask is, cos in python, this is an issue with pandas dataframes if inplace=True is used instead of a reassignment

@flaviaerius Is there any caveats to this way as opposed to mtcars <- mtcars %>% mutate Say you had mtcars as an input param for a function, could the %<>% affect the value of mtcars variable in the global scope?

The most underrated function in R is {magrittr}'s assignment pipe: %<>% It assigns all the modifications made to your dataframe back to the same dataframe variable. mtcars %<>% mutate(avg_wt = mean(wt)) Then, mtcars will have the column avg_wt. #rstats

@DRobertBailey @LaTrioli @VictorianCHO @MaryAnneThomas youtube.com/watch?v=9DYvwh…

@LaTrioli @VictorianCHO @MaryAnneThomas “I have ‘excepted’ that advice”

I have accepted the CHO advice by not accepting the CHO advice … 🤷🏻‍♀️ ⁦@VictorianCHO⁩ ⁦@MaryAnneThomas⁩

Why does Outlook send me reminders for meetings that happened a week ago? I clearly attended, I clicked the meeting link through the Outlook calendar at the time of said meeting, and you can't track that? And if I didn't go... no good can come from following up now!

@PRGuy17 For those interested, the pandemic powers were extended - health.vic.gov.au/covid-19/victo…. These replace the SoE powers that were designed for short-term events, not pandemics. Guy spent a long time advocating against pandemic powers only to clearly forget they existed.

Victorian Opposition leader Matthew Guy has been left red faced after today calling on Dan Andrews to end the State of Emergency, saying the Premier's “lust for power” is stalling the state — the State of Emergency declaration ended last year. #springst

@Psy_Fer_ @chrisnrg WSL2 integrates pretty well with the X11 software too (with some tinkering), so Linux GUI apps should be compatible with Windows too

@chrisnrg How many bioinformaticians use windows? and if they do, how many don't use wsl? I'd wager not many.

gs.statcounter.com/os-market-shar… If your bioinformatics software doesn't work on Windows, does it really work for your users?