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Dan Nasko
376 posts
Dan Nasko
@dnasko
Dog dad. I work @PacBio. Tweets are my own.
San Diego, CA شامل ہوئے Mayıs 2008
573 فالونگ227 فالوورز
Dan Nasko ری ٹویٹ کیا
Dan Nasko ری ٹویٹ کیا
Dan Nasko ری ٹویٹ کیا
I'm happy to see sawfish now available for the community to use. Sawfish is another step towards high accuracy and consistent SV genotyping. Great work by Chris Saunders and many others.
Chris Saunders@ctsa11
Happy to introduce sawfish, a new HiFi structural variant caller emphasizing local haplotype modeling to improve SV representation and genotyping in both single and joint-sample analysis contexts: 1/n doi.org/10.1101/2024.0…
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Upgrade your lab with #Onso for $99k through our trade-in program.
Experience #PacBio Q40+ accuracy and SBB technology, setting new standards in precision. Don't miss this transformative opportunity! T&Cs apply.
Upgrade now: bit.ly/4cdHZX3
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The platinum pedigree genome - four generations, near T2T phased assemblies, multiple technologies including @PacBio HiFi. Here's your new "truth" set!!
biorxiv.org/content/10.110…
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Short-read #sequencing with #Onso continues to push the boundaries of genomic discoveries across diverse fields of research.
Explore how the Onso Q40+ accuracy is unlocking new levels of precision and certainty in oncology, public health, and beyond. bit.ly/3ztRTpK
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Dan Nasko ری ٹویٹ کیا
Considering a short-read upgrade?
Vote: What's the most compelling feature of the #Onso system for your research? See how Onso can boost your research and grab our exclusive trade-in offer. T&Cs apply.
Details: bit.ly/4bSFmtL
#PacBio
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Dan Nasko ری ٹویٹ کیا
long reads: Lightweight taxonomic profiling of long-read sequenced metagenomes with Lemur and Magnet dlvr.it/T8TZ2X
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Great talk by @val_deanda summarizing the benefits of long reads in microbial metagenomics! #ASMicrobe
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Come see @dnasko speak at the @ZymoResearch booth on the fecal reference #longread #metagenome project on Sat from 2:40-3pm and then stick around for the presentations in the @PacBio booth next door #933 from 3-4! And we have talks at the same time Friday too and prize drawings.
Zymo Research@ZymoResearch
Master the Microbiome with informative in-booth talks from Zymo Research's experts and esteemed collaborators at ASM Microbe! Join us at booth #1033 this Friday and Saturday for engaging discussions on #SamplePrep, #Standards, #Metagenomics, #Bioinformatics, & more. See you soon!
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Dan Nasko ری ٹویٹ کیا
Our #microbiome SMRT Grant just opened. Apply if you'd like!
We're looking for #longread projects for full-length #16S, shotgun #metagenome read-based profiling, or metagenome assembly/MAGs + @PhaseGenomics ProxiMeta Hi-C with lib prep and seq at @ZymoResearch and @SeqCenter.
PacBio@PacBio
Discover new possibilities with accurate long-read sequencing at scale. Apply for the #PacBio 2024 Microbial Genomics SMRT Grant. Tell us in 100 words or less how HiFi sequencing will advance your #metagenomics research to win free sequencing! Details: bit.ly/3z89XFJ
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Low input? Low frequency variants? Low cost? Get it all with the PacBio Onso system and our PacBio Compatible partner @idtdna's xGen high-conversion NGS library prep.
See the data here:
Dataset: bit.ly/4aOho2e
Tech note: bit.ly/4aKvWQj
#PacBio #ESHG2024
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Dan Nasko ری ٹویٹ کیا
Our new pre-print is live! 🧬🦠🎉
We performed a deep-sequencing experiment using @PacBio HiFi reads (Revio & Sequel IIe) on a pooled human gut reference from @ZymoResearch, with a primary focus on #metagenome assembly.
1/6
doi.org/10.1101/2024.0…
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Fantastic review of #metagenomics with long read sequencing, including @PacBio HiFi; many advances covered.
Strong conclusion:
"long-read sequencing has firmly established its
position and is poised to revolutionize another frontier in life sciences with unwavering potential" 🎉
Fritz Sedlazeck@sedlazeck
Review paper out today @naturemethods on long-read #sequencing for #metagenomic: rdcu.be/dGeIj Great advancements on utility of @nanopore @PacBio forming novel insights in diversity and resolution. Great work by @D_Agustinho @fuyvei96 @traingene @BCM_HGSC @RiceCompSci
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We’ve graduated HiFiCNV to 1.0 to recognize that it’s now a stable part of our HiFi WGS toolchain -- to celebrate we’ve added a few quality-of-life and error-handling improvements. Find more details on our latest github release here:
github.com/PacificBioscie…
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Dan Nasko ری ٹویٹ کیا
Happy that our manuscript describing TRGT is now available. If you would like to learn more about the importance of tandem repeats and the variation that must be measured when studying them, please also check out the accompanying research briefing: nature.com/articles/s4158…
Nature Biotechnology@NatureBiotech
Characterization and visualization of tandem repeats at genome scale go.nature.com/3TKX7FF
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