Nick Semenkovich, MD PhD

94 posts

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Nick Semenkovich, MD PhD

Nick Semenkovich, MD PhD

@semenko

Dad⁴. Founding member of @MedicalCollege Data Science Institute, focused on liquid biopsies / AI x Bio. Via @MIT ⨉ @WashU ⨉ @MassGenBrigham

Milwaukee شامل ہوئے Kasım 2008
3.8K فالونگ1.3K فالوورز
Nick Semenkovich, MD PhD
@tallphil Love this!! Would love to get involved. Played with something similar first in python with RSeQC: github.com/semenko/rseqc-… High test coverage also exposes some cool edge case bugs like a longstanding error in soft clipping: #620--2026-03-19" target="_blank" rel="nofollow noopener">github.com/semenko/rseqc-…
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Phil Ewels
Phil Ewels@tallphil·
Super excited to be launching two things today: #RustQC 🦀🧬 and rewrites.bio 🚀 I used AI to rewrite 15 RNA-seq QC tools into a single Rust binary (I've never written any Rust). It ended up being over 60x faster. Here's the story 🧵 seqeralabs.github.io/RustQC/
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Pradheep J. Shanker, M.D.
Pradheep J. Shanker, M.D.@neoavatara·
What's funny is lot of American grads don't even take step 2 before they apply for residency.
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Francis Deng, MD
Francis Deng, MD@francisdeng·
@mahesh_shenai @sfgreen16521 @semenko Different industries have different staffing logistical needs so different labor markets make sense. The NFL has a draft. Uber and Lyft have phone apps. Economics has a scramble. Ophtho has SF Match. Urology has AUA match. Pharmacy, psychology, dentistry have matches, too.
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Francis Deng, MD
Francis Deng, MD@francisdeng·
The bias in this report is bad news for GME. A consolidated residency match gives a pro-competitive, fair, and coordinated market to place applicants into programs, optimizing for everyone's preferences so that pairings are stable. Also, the couples match is humane.
House Judiciary GOP 🇺🇸🇺🇸🇺🇸@JudiciaryGOP

#BREAKING: New Report Exposes How Medical Residency Hiring Monopoly Harms Patients and Doctors Newly obtained documents reveal how the Match placement system for resident physicians operates as a monopoly in the medical residency hiring market. Its monopolistic practices harm resident physicians, impede patients' access to care, and constrain the growth of America's physician workforce. A special-interest antitrust exemption currently shields the Match’s anticompetitive conduct from scrutiny, allowing it to harm the public while avoiding judicial oversight. Read the full report here: judiciary.house.gov/sites/evo-subs…

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Nick Semenkovich, MD PhD
Nick Semenkovich, MD PhD@semenko·
The #Match2026 should 💯% be reformed, along with the mess of GME that frequently exploits trainees.
House Judiciary GOP 🇺🇸🇺🇸🇺🇸@JudiciaryGOP

#BREAKING: New Report Exposes How Medical Residency Hiring Monopoly Harms Patients and Doctors Newly obtained documents reveal how the Match placement system for resident physicians operates as a monopoly in the medical residency hiring market. Its monopolistic practices harm resident physicians, impede patients' access to care, and constrain the growth of America's physician workforce. A special-interest antitrust exemption currently shields the Match’s anticompetitive conduct from scrutiny, allowing it to harm the public while avoiding judicial oversight. Read the full report here: judiciary.house.gov/sites/evo-subs…

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Nick Semenkovich, MD PhD
Nick Semenkovich, MD PhD@semenko·
Can we just put Mark Cuban in charge of healthcare? Dude is remarkable knowledgeable about the insanity of site neutral payments & more!
Mark Cuban@mcuban

The are a function of health insurance plans. The insurance companies create plans with deductibles that most people can’t afford. So to get to the insurance money from their plan, they will loan the patient money to cover their deductible. That turns the hospital into a sub prime lender. Then the insurer will under pay, late pay and claw back in the contract. Costing the hospital more cash. And costing them in administrative costs even more Then the insurer will delay approvals and deny care, earning interest on the premiums. So then the hospitals. Non profit or not, have to compensate for the issue with insurance companies. So they create ridiculous shit like facilities fees, abuse 340b programs , abuse site neutrality and more. And of course non profits don’t pay taxes And then the biggest provider systems will say they can’t make money on Medicare. Which is a function of them spending like drunken sailors on everything they can. From buildings to consultants. There are more administrators than doctors and in aggregate they make more. It makes no sense that hospitals spend so much money on consultants. It’s a waste. It’s like them want them to give the CEO cover , so they can try to buy more hospitals which leads to more pay for the ceo Break em all up

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alex rubinsteyn
alex rubinsteyn@iskander·
Giraffe saliva cures headaches! (…in combination with ibuprofen…) Chanting this AI generates mantra promotes weight loss! (…single arm study participants also took semaglutide…) Do you get the problem?
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Nick Semenkovich, MD PhD
Nick Semenkovich, MD PhD@semenko·
I'm very sympathetic to that and deal with it sometimes. I encourage those to join a trial when possible (it frequently is!) / compassionate use of early stage drugs. Many folks are also tragically exploited and spend their last days (and dollars) on snake oil. (Even Steve Jobs did!)
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Aykut Uz
Aykut Uz@aykutuz·
@semenko @biogerontology Patrick claims "it is easy to eradicate cancer cells" [in 1. mice without toxicity; and 2. in humans too, despite toxicity -bc we couldn't do enough trials] . What we are saying is, people at their death beds should be given a chance of having their shots, if they want.
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Jiankui they/them
Jiankui they/them@IC50_cent·
Very techbro of the dog guy to sequence and use alphafold to find a bespoke therapy for a cancer that is almost unilaterally driven by KIT which has multiple approved inhibitors
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Jiankui they/them
Jiankui they/them@IC50_cent·
@pemulisking 50% chance this guy tries to raise money for a AI platform mRNA startup and this all some publicity stunt
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Nick Semenkovich, MD PhD
Nick Semenkovich, MD PhD@semenko·
They … don't though, at least not yet? I'm optimistic! [And I'm predominantly CS too! :) ] We research this all the time. Billions flowing into custom / tailored mRNA neoantigen vaccines. Tons of promise & hope! I'm just not sure this piece (which I'm skeptical is fundraising for a future dog drug company) helps - hits the usual "regulators are the reason you die of cancer" trope.
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Aykut Uz
Aykut Uz@aykutuz·
@semenko @biogerontology I think nobody claims that this was a perfect scientific study, for that was not the motive. People, - including myself-, didn't know that we have tools at our disposal that would meaningfully increase our chances of having a shot at deadly cancer phenotypes. On dogs.. or us.
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Nick Semenkovich, MD PhD
Nick Semenkovich, MD PhD@semenko·
I actually think this is a great idea for a company. Huge profit margins + little need for efficacy data. Give dogs checkpoint inhibitors + random mRNA, people pay $$ for possibly effective "AI personalized" treatment. Regulators won't solid evidence as not given to people. No insurers to get involved for complain, etc.
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