Shaun Jackman

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Shaun Jackman

Shaun Jackman

@sjackman

I develop Cell Ranger at 10x Genomics, Homebrew, and developed ABySS for my PhD at UBC. I cook, sing, travel, see theatre, and play boardgames for fun. 🏳️‍🌈

Vancouver, Canada شامل ہوئے Eylül 2007
502 فالونگ2.8K فالوورز
پن کیا گیا ٹویٹ
Shaun Jackman
Shaun Jackman@sjackman·
🧬 10x Genomics is hiring! My first three months at 10x have been fantastic. My colleagues are friendly and helpful. 10x is based in Pleasanton, CA. Remote work may be possible, depending on the position. Check out open positions at grnh.se/c3f537b11
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Pall Melsted
Pall Melsted@pmelsted·
Excited to share this preprint that describes my latest work on using GPUs to accelerate processing of RNA-seq data. The title says it all: "RNA-seq analysis in seconds using GPUs" now on biorxiv biorxiv.org/content/10.648… Figure 1 shows they key result
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10x Genomics
10x Genomics@10xGenomics·
📢 New Feature Alert 🎉 The beta version of Automated Cell Annotation is live in Cloud Analysis! Reduce the burden of manual annotation & visualize cell types instantly to get more accurate #singlecell insights faster. Try it now: bit.ly/3XVOdHe
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Magda Marečková
Magda Marečková@magda_mareckova·
Globally, millions of individuals are affected by endometrial / uterine disorders, yet the #endometrium and the role of its #cellular #heterogeneity in these disorders have been hugely understudied compared with other human tissues and diseases.
Magda Marečková tweet media
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Human Cell Atlas
Human Cell Atlas@humancellatlas·
Congratulations to all involved in creating this cellular map of the endometrium, the inner lining of the uterus, during multiple phases of the menstrual cycle.  This work helps advance understanding of the healthy endometrium and conditions such as endometriosis. @NatureGenet
Magda Marečková@magda_mareckova

Globally, millions of individuals are affected by endometrial / uterine disorders, yet the #endometrium and the role of its #cellular #heterogeneity in these disorders have been hugely understudied compared with other human tissues and diseases.

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10x Genomics
10x Genomics@10xGenomics·
Technology impacts the reliability of your #singlecell data. An independently conducted study reported that our Chromium Flex and 3' assays outperformed other technologies. See how the others stacked up: biorxiv.org/content/10.110…
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𝕐
𝕐@nomad421·
We're honored to have been funded by @cziscience in cycle 6 of their EOSS program & look forward to bringing some recent algorithmic advances to widely-used tools & building some new ones as well! Excited to work with @scarecrow00007, @daniel_c0deb0t, @_NoahCape & others on this!
CBCB_UMD@CBCB_UMD

Rob Patro (@nomad421) is receiving $400K from @ChanZuckerberg to advance open-source transcriptomics tools! This grant will enhance gene expression analysis, improving software performance and interoperability, and fostering open science. Learn more: go.umd.edu/1p7t

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Rahul Satija
Rahul Satija@satijalab·
Excited to share our Seurat update supporting VisiumHD data from @10xGenomics. We explore and validate the ability of HD to map the spatial localization of individual cell types: satijalab.org/seurat/article…
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𝕐
𝕐@nomad421·
We had a great meeting & and are moving forward with a GitHub org. for planning & developing foundational building blocks for sequence analysis & related tasks in @rustlang. The org. "rust-seq" can be found here github.com/rust-seq. Reach out if you're interested in joining!
𝕐@nomad421

For those interested, our plan is to meet in the lobby of the conference center at ~2PM. For those who wish to participate, but are not attending RECOMB, hopefully we can find some place nearby to migrate. Look for the "cast" of rustaceans.

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Fred Hutch Innovation Lab
Fred Hutch Innovation Lab@HutchInnovation·
@10xGenomics released new single cell GEM-X assays in March, and we were quick to try it out. FHIL benchmarked 5’ GEM-X against 5’ Next GEM v2 chemistry with sorted T-cells from healthy donor PBMCs and targeted the recommended max for each assay, 20k and 10k respectively.(1/8)
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andrew gao
andrew gao@itsandrewgao·
ATTN: Bioinformatics/Comp Bio people Save this thread for a walkthrough of #Devin AI designing primers for flu detection from scratch! I asked "Help me identify DNA primer candidates for the most recent flu strain in the US" Here's what happened! 🧵 #biotech #compbio
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Samuel Colvin
Samuel Colvin@samuelcolvin·
It's happening, the big changes to PyO3 are nearly released. Should give a ~25%+ performance boost to most Rust code for Python. This should be one of the biggest step changes in the Python ecosystem this year. I'm really pleased @pydantic has helped a little. github.com/PyO3/pyo3/pull…
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Eduard Porta
Eduard Porta@eportacangen·
Sometimes an image is really worth a thousand words Same sample, consecutive sections, VISIUM CytAssist vs Xenium Very nice @SergiCervilla!
Eduard Porta tweet media
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Cathrine Sant
Cathrine Sant@cathrine_sant·
When you tell an 'omics lab to dress up for Halloween.. @doctorcorces
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دریافت کریں

@Muzz_Haniffa @BBCNews @NatureGenet @cziscience @scarecrow00007 @daniel_c0deb0t @_NoahCape @10xGenomics