EpiGraphDB

4 year PhD studentship project fully funded by Roche on literature mining with LLMs and knowledge graphs findaphd.com/phds/project/a…

We are adding a user experience survey (forms.office.com/e/nM71WCid3g) to the ASQ platform asq.epigraphdb.org, which is a natural language query interface to EpiGraphDB. Please give ASQ a try and provide your valuable feedback via the survey!

Application closes in 14 days for this 3-year data scientist position in ML and NLP at @mrc_ieu. Get in touch if interested! #machinelearning #NLP

Also pleased to share our preprint led by @YiLiu6240 on triangulating evidence in health sciences with Annotated Semantic Queries (asq.epigraphdb.org) @mrc_ieu medrxiv.org/content/10.110…

Pleased to share our preprint led by @SobczykMaria comparing Mendelian randomization studies and randomized controlled trials using electronic databases with @mendel_random @mrc_ieu medrxiv.org/content/10.110…

R package [epigraphdb](cran.r-project.org/web/packages/e…) for querying [EpiGraphDB](epigraphdb.org) data has been updated on CRAN to v0.2.3 (a minor update). More updates for EpiGraphDB are in the work and to be released this year.

Just a reminder that we are seeking health data scientists to join the @mrc_ieu - closing 31st Oct. bristol.ac.uk/jobs/find/deta…

We are seeking two health data scientists and a database manager to join @mrc_ieu in Bristol - please get in touch if interested! bristol.ac.uk/jobs/find/?sea…

New postdoc opportunity in Health Data Science at the MRC Integrative Epidemiology Unit (@mrcieu) at University of Bristol. Get in touch if interested! bristol.ac.uk/jobs/find/deta…

New data management post working on the @OpenGwas database in Bristol bristol.ac.uk/jobs/find/deta… @mrbase2 @BrisCancerEpi @mrc_ieu

EpiGraphDB version 1.0 epigraphdb.org has been released. Here is the blog post summarising key features biocompute.org.uk/post/epigraphd….

Now live! Mendelian Randomization dictionary, with >100 clear & comprehensive definitions & descriptions for doing, understanding & interpreting MR studies. @Caketin_Wade @DeborahLawlor2 @MCarol_Borges @explodecomputer @jack_bowdenjack Available here: mr-dictionary.mrcieu.ac.uk

Fancy a one-stop shop for data mining the published literature which also enables analyses (including Mendelian randomization) of publicly available multiomic data? If so, EpiGraphDB could be for you doi.org/10.1093/bioinf…

As part of the @epigraphdb build process, we have inadvertently developed a universal Snakemake/Docker pipeline to create a @neo4j graph. Includes predefined schemas, QC steps, fast import, node conflict resolution. Reuse & collaborations most welcome :) ieup4.blogs.bristol.ac.uk/2020/11/17/neo…

IEU blog: reducing drug development costs ieup4.blogs.bristol.ac.uk/2020/11/09/red…

Our 4-year Wellcome-funded PhD programme in Molecular, Genetic and Lifecourse Epidemiology is open for applications to start in Oct 2021 findaphd.com/phds/program/w… @BrisMolGenetic @mrc_ieu @BrisPopHealth

Final reminder of this data science senior research associate post closing tomorrow!

How will Brexit impact on food safety in Britain? New blog from @marina_vab @PlotThiggins discusses their @JGIBristol data visualisation competition entry which used @foodgov data ieureka.blogs.bristol.ac.uk/2020/10/06/vis…

The `epigraphdb` R package is in the top 40 new CRAN packages. rviews.rstudio.com/2020/09/22/aug…