Boris Sobolev

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Boris Sobolev

Boris Sobolev

@soboleffspaces

𝗦𝗰𝗵𝗼𝗹𝗮𝗿/𝗔𝘂𝘁𝗵𝗼𝗿/𝗧𝗲𝗮𝗰𝗵𝗲𝗿 • causality in plain language •

Vancouver Beigetreten Aralık 2019
51 Folgt1.5K Follower
Boris Sobolev
Boris Sobolev@soboleffspaces·
For Hegel, change is not something that happens to reality from the outside but is the very essence of reality itself. Being is becoming. Change is unfolding according to a logical necessity: every state of affairs contains within itself an internal tension that propels it beyond itself into something new. This process is conceptualized as the relationship between thesis, antithesis, and synthesis, where each stage preserves and transcends what came before in what Hegel calls *Aufhebung*, simultaneous canceling, preserving, and elevating. Ultimately, for Hegel, the real is rational precisely because it changes toward a new realization of itself.
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Adrian Levy
Adrian Levy@adrianlevy_nova·
@soboleffspaces A chain of events starting in the primordial ooze 4 billion years ago…its turtles all the way down.
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Boris Sobolev
Boris Sobolev@soboleffspaces·
What was the most heated discussion with my university friends in this trip to Motherland? Sapolski’s Determined… touched the nerve apparently 🫢
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Boris Sobolev
Boris Sobolev@soboleffspaces·
Diabolic translation of the title means ‘all has been decided’ 😊
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Boris Sobolev
Boris Sobolev@soboleffspaces·
Unexpected echo of my 1975
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Boris Sobolev
Boris Sobolev@soboleffspaces·
@PatientStormDoc in my experience, it is the pride of avoiding assumptions literally, being proud of knowing nothing, followed by pagan’s exultation of Ex Machina via randomization… ‘causality in design’ became psalm 150 in clin epi circles
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Lawrence Lynn
Lawrence Lynn@PatientStormDoc·
@soboleffspaces Early on it was hubris born of unrecognized assumptions. Now the synthetic foundations of syndrome science are known and the response is the “silence defense”. The arrogant scientist debates,. These people have retreated into “the keep” and that’s a harder nut.
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Boris Sobolev
Boris Sobolev@soboleffspaces·
Best baristas in the world in Soroka coffee shop in my hometown Yurga, Siberia!
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Boris Sobolev
Boris Sobolev@soboleffspaces·
@Medical_Nemesis there are two matters to consider here - our brains are exceptionally good at abstracting, ie emphasizing one aspect of reality at the cost of ignoring others - knowledge is a collective endeavor, we practice together
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Boris Sobolev
Boris Sobolev@soboleffspaces·
i’m skeptical of the medical community’s ability to regulate itself in this matter… i’m traveling to places which offer patients to western RCT managers… in a/p lounge, a passenger fellow next to me was working his phone to accommodate the request from a big pharma co. for local pts for their RCT… his recurring phrase was ‘don’t worry, all specs will be met’ ‘specs’ means made-up descriptors, which will be translated from english, meaning the linguistic constructs will be used to represent the patient, the condition, the treatment
Lawrence Lynn@PatientStormDoc

This simple, decades-long standardized RCT design flaw induced paradox (which no one will deny when challenged), harmful as it has been, is also a breakthrough pedagogical opportunity. If the causal community demonstrates clearly how the paradox arises and how structural causal modeling resolves it, SCM will become recognized as an essential patient safety component of CONSORT strengthening RCT design with explicit causal structure. @eliasbareinboim @yudapearl @soboleffspaces

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Boris Sobolev
Boris Sobolev@soboleffspaces·
It’s a deep observation - ‘not a causal entity’! even though everything is caused, not everything is causing! 😊 made-up constructs are not causes. that’s a big hurdle in teaching causal graphs in epidemiology. the best way to design causal inference, experimental or otherwise, is to start with the study unit: real-world entity to which intervention is applied and from which response is recorded
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Lawrence Lynn
Lawrence Lynn@PatientStormDoc·
This simple, decades-long standardized RCT design flaw induced paradox (which no one will deny when challenged), harmful as it has been, is also a breakthrough pedagogical opportunity. If the causal community demonstrates clearly how the paradox arises and how structural causal modeling resolves it, SCM will become recognized as an essential patient safety component of CONSORT strengthening RCT design with explicit causal structure. @eliasbareinboim @yudapearl @soboleffspaces
Lawrence Lynn@PatientStormDoc

There are two instantiations of the paradox which, unrecognized, have plagued critical care science for decades. First “RCT-to-clinical protocol effect reversal”. Suppose investigators conduct a RCT to test a treatment for patients with severe infection, which experts label “sepsis.” A consensus panel defines disease and cause agnostic triage criteria for sepsis, and patients meeting those criteria are enrolled in the trial. The treatment protocol is tested in what appears to be a well-designed &! powered RCT that meets all methodological standards & reports strong evidence of benefit. The treatment protocol is then converted into clinical guidelines. However, when implemented in practice, the protocol surprisingly results in patient harm, even when applied with the same treatment timing, the same hospital system, the same caregivers, & using the same clinical entry criteria as the trial. This is Lynn’s paradox. The paradox arises because the RCT was designed without causal modeling. Sepsis is not a single disease or causal entity it was initially derived as similarity heuristic & then migrated to causal disease equivalent status in the 80s. In practice, more than 50 different infectious diseases/causes can satisfy the consensus criteria used to define sepsis. If the treatment benefits some of these diseases/causes but harms others, the overall result of the RCT reflects only the average effect across that specific tested mixture of diseases. The trial appears positive only because the particular mixture of diseases among enrolled participants happened, by chance, to favor those that benefited from treatment. Unfortunately, this mixture is not stable. When the same criteria are applied in routine clinical practice, the proportions of diseases will shift. The result can be clinical guidelines derived from a “positive” RCT that produces net harm. This phenomenon also appears as RCT reversal, in which sequential trials of the same intervention in the same setting and the same every criteria, equivalent covariates, and treatment timing produce opposite conclusions. This is Lynn’s Paradox of sequential RCTs. The mechanism can be illustrated with a simple toy model. Imagine sequential RCTs enrolling patients who meet the latest consensus “sepsis criteria” but some participants have one infectious diseases (d1) and other participants have another infectious disease (d2). (both diseases meet the trial entry criteria). The treatment effect benefits d1 to the same degree that it harms d2 If the first RCT happens to enroll more participants with d1, the trial will show benefit. If a subsequent RCT enrolls a higher proportion of d2 the result will reverse and show harm, even though the hospital, caregivers entry criteria, trial design, power, and covariate mix and treatment protocol remains equivalent This is difficult to understand only because no one trained in SCM would think that disease & cause agnostic entry criteria for an RCT is acceptable. How could covariates be modeled as they may be different for each disease/cause and the disease/cause mix is not stable. Yet this is standard structure in critical care syndrome science Lynn’s paradox was the reason the ventilator protocols failed during the pandemic. Severe COVID pneumonia met the disease agnostic criteria for adult respiratory distress syndrome (ARDS) so the guideline committee thought they had strong evidence for a particular ventilator protocol (high PEEP) and produced guidelines with “strong” evidence based recommendations for this ventilator protocol But COVID pneumonia did not exist when the source RCT was performed it only met the criteria used in the trials. But meeting the syndrome criteria establishes causal equivalence in syndrome science so they thought they had high level RCT evidence for the protocol. It failed & has now been abandoned. That was Lynn’s Paradox Requiring SCM interrogation as part of RCT design would prevent the paradox

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Bayesia
Bayesia@BayesianNetwork·
Bayesia is excited to exhibit at the 2026 INFORMS Analytics+ Conference in National Harbor, MD, April 12–14, 2026. We’ll highlight how our latest innovations let analysts go from a single open-ended question to a full Bayesian network model using AI-assisted knowledge elicitation with BayesiaLab, Hellixia, and HellixMap. Stop by to see how this workflow accelerates causal and risk-centric modeling for real-world decision support.  hubs.ly/Q03_KyVn0
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Womansplainer
Womansplainer@iWomansplainer·
I wish there was one food I could eat every day that could alone meet all my nutritional needs perfectly. No meal prep, no cooking, no wandering through the grocery store each week. Just one item to keep stocked. Eat it 3x a day, every day, without needing to even think.
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Biostatsfun
Biostatsfun@biostatsfun·
@iWomansplainer Oatmeal is close to that. And you can soak in soy milk overnight. Add toppings to your liking. Fruit and nuts are good options.
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Boris Sobolev
Boris Sobolev@soboleffspaces·
@yudapearl Indeed, the EM algorithm was a successful attempt in statistics to treat missing data as incomplete knowledge.
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Judea Pearl
Judea Pearl@yudapearl·
A friend just informed me that our colleage, Professor Arthur Dempster, has died last month at 96. Arthur was an intellectual giant, famous for developing the EM algorithm as well as for the Shafer-Dempster theory, but remained skeptic about causation. memoritree.com/memorial/arthu…. May his memory be an inspiration.
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Boris Sobolev
Boris Sobolev@soboleffspaces·
Educate bureaucrats?! lol Here’s what I was taught at university in 1979 (from my lecture notes). “Knowledge is always concrete.” “This is a core principle of science: real knowledge takes into account actual connections, interactions, and the specific conditions of an object, rather than relying on abstract theories alone.” “Scientific statement depends on context, situation, and time. It requires analysis of concrete circumstances, not universal formulas.” “Key aspects of the concreteness of knowledge: • attention to context and conditions (place, time, circumstances) • connection to practice: knowledge must work in real life • development: knowledge changes as new aspects are discovered • opposition to abstraction: unlike bare theory, concrete knowledge accounts for all essential properties of the real application” “The concreteness of knowledge requires experimental facts to be examined in their real interactions, not in isolation or detached from their application.” All of this was known 50 years ago to any Soviet student trained for scientific work. The way scientific bureaucracy operates today is not an oversight. It is a choice.
Lawrence Lynn@PatientStormDoc

This is exactly “their defining feature as a class: a missing skill of “sublation”” as it relates to clinical trials. But up until now they didn’t perceive the need to develop that skill. The CI community needs to take this opportunity to turn-key the integration with a definitive baby step. Show an integrated CONSORT with very basic SCM explication. Broad adoption will come once the first practical examples are visible but the CI community cannot expect them to to make the first step or read your literature at this stage.

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Boris Sobolev
Boris Sobolev@soboleffspaces·
Who says anything about “further philosophical synthesis”? I’m trolling the “Don’t Look Up!” crowd 🤡 Those who splurge funds on averaging RCT results, then with British Jesuitism call it “meta-analysis,” and, impressed by the term, regale it as EBM. But not on causal graphs for result transportability. Go figure. Or maybe it isn’t trolling at all? What if this is their defining feature as a class: a missing skill of “sublation”? 😂
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Lawrence Lynn
Lawrence Lynn@PatientStormDoc·
No further philosophical synthesis is required; only open minds on both sides. The initial step toward resolution is simple and procedural. Causal -inference discussions often jump to sophisticated transportability mathematics while traditional trial design assumes transportability without question. That’s the first problem. The CI–trial-design interface should start with two simple commitments: randomization for unbiased estimation and causal modeling for safe transport. The simple act of embedding DAGs and selection analysis into CONSORT would operationalize this. Conceptually, this is a small step; institutionally, it is a large one that requires CI and clinical-trial communities to meet each other halfway.
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Boris Sobolev
Boris Sobolev@soboleffspaces·
Can a causal effect learned in one population be applied to a different population? Deceptively simple question. Answering this question though requires mapping out a causal graph along with a selection node to see if systematic differences between the source and target populations can be addressed. Yet the entire premise of an RCT is precisely to avoid constructing an explicit causal graph. At the same time, without causal graphs equipped with selection nodes, an RCT is merely a local anecdote. It would take Hegel’s talents to sublate the tension between a "graph-blind, model-free" experiment and a graph-dependent transporting of its results.
Lawrence Lynn@PatientStormDoc

Don’t miss this thread re: The @NEJM article describing @FDA reduced RCT requirements due to ‘modern RCT methods’. Note the reliance on enhanced internal validity with no requirement or mention of optimization of safe transportability by causal modeling. This needs to be corrected. @soboleffspaces @eliasbareinboim @yudapearl

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