NeuroJSON

Here are the 5 guiding principles of @NeuroJSON: 1.Open-data MUST BE provided in "source-code" format 2.Open-data MUST BE human-understandable 3.Diverse data formats do harm to #openscience and #opendata 4. Small is beautiful 5. Metadata is your data #NeuroJSON_guiding_principles" target="_blank" rel="nofollow noopener">neurojson.org/wiki/index.cgi…

I prepared the below diagram for my @NeuroJSON poster presented at #OpticaBiophotonics24 it is a nice visual on the overall architecture we created at NeuroJSON.io, and deserves further explanations on many of the ideas behind read more #NeuroJSON_data_exchange_platform_architecture" target="_blank" rel="nofollow noopener">neurojson.org/wiki/index.cgi…

with the new #jdata module, one can now access the rich @BIDSstandard #neuroimaging datasets on NeuroJSON.io via #RESTAPI see an animated demo to find out how easy it is to query @OpenNeuroOrg datasets, retrieve metadata, filter data, and download data files on-demand

#python #jdata module major update (v0.6) 🆕#JSONLab like #jsonpath function for slicing complex dict/list 🆕loadurl to directly load JSON/binary JSON via #REST-API 🆕jdlink for on-demand download/cache externally linked data files 🆕unit-tests, examples github.com/NeuroJSON/pyjd…

because #JSONLab is compatible with both @MATLAB and @GnuOctave, exactly the same REST-API access can be done in Octave here is the 3rd part of the tutorial using Octave

#neuroimaging researchers, we want to show you a cool way to access complex @OpenNeuro @BIDSstandard datasets No need to download gigabytes of files before starting analysis You can use our NeuroJSON.io REST-API and #JSONLab to get data on-demand @MATLAB & @GnuOctave

I'd like to invite folks doing research in #neuroimaging,#fnirs,#biophotonics and #datascience to participate our first @NeuroJSON community survey neurojson.org/survey/2024-1 @oostenvr @fNIRS_org @BIDSstandard @GuiomarNiso @furranko @yarikoptic @ReproNim @NeuroFedora @andreashorn_

check this out we made a @BIDSstandard dataset_description.json creator⚙️,editor✏️ and validator✅ neurojson.org/Create/dataset… we use @jsonschema to verify user inputs follow the recommended formats, making it easy for future data harmonization @NeuroJSON @OpenNeuroOrg @datalad

All datasets on NeuroJSON.io are stored in ubiquitously supported #JSON format and can be universally accessed in nearly all environments using URL based #RESTful-APIs here is a tutorial how to directly load datasets from NeuroJSON.io in #Python and @MATLAB

Here is a video walk-through on how to dive into @OpenNeuroOrg datasets, and use the in-browser rendering tools to preview 3-D imaging volumes, mesh objects, and more if you want to take a look, head this way 👇 neurojson.org/db/openneuro

A key area that @NeuroJSON and neurojson.io is hoping to facilitate is the "findability" of free datasets. This is achieved thank to modern #NoSQL databases. Our metadata are hosted in an #opensource @CouchDB, offering many ways to extract and search #metadata

More on data preview functions in neurojson.io: you can preview 1-D/2-D single data, 3-D structural MRI and even 4-D fMRI time series in the NeuroJSON.io web based interface We use @Threejs library for fast rendering. try this #preview=$.tissue" target="_blank" rel="nofollow noopener">neurojson.org/db/fieldtrip(a…

#neuroimaging and #neuroscience peeps, we are extremely excited to announce a new service to help you navigate across growing public neuroimaging datasets, especially @BIDSstandard datasets! neurojson.io you can search over 38000 subjects and 1000 datasets @NeuroJSON