Open2C

We are thrilled to announce that 3 amazing contributors will be joining us for Open2C’s very first Google Summer of Code ☀️! #GSOC24 A warm welcome to @alejandrogzi @TalipZengin_ Olesia Slavska!🧬💻 Looking forward to an exciting summer of coding and collaboration! 🚀🌟

Also we are moving to the other site, find us at open2c.bsky.social!

Planning our move away from Slack! Considering Discord or Zulip. Any pros/cons for either of those for us as a group working on open source software for biological data analysis?

For more details: summerofcode.withgoogle.com/programs/2024/…

We are thrilled to announce that 3 amazing contributors will be joining us for Open2C’s very first Google Summer of Code ☀️! #GSOC24 A warm welcome to @alejandrogzi @TalipZengin_ Olesia Slavska!🧬💻 Looking forward to an exciting summer of coding and collaboration! 🚀🌟

Pairtools v1.1.0 is out on github and PyPI and will soon be released on bioconda! This release fixes a few major bugs introduced into sort and dedup in recent versions and thus is highly recommended for upgrading! Full release notes: github.com/open2c/pairtoo…

You can see our available project ideas at github.com/open2c/open2c.…. Interested applicants: join our #slack workspace for more info.

The #GSoC program offers an exclusive opportunity for anyone who is interested in contributing to #Open2C’s suite of open source software for genomic analysis. 🧬📈

3/ 🧑‍💻Finally, we are thrilled to announce that #Open2C has been selected as a host organization for @Google Summer of Code 2024!!! #GSoC2024, #GSoC24 summerofcode.withgoogle.com/programs/2024/…

2/ 📜We are happy to announce the publication of our #bioframe application note in @OxUniPress #Bioinformatics! Our first publication as #Open2C 🎉 doi.org/10.1093/bioinf…

Happy Friday, all. We have several exciting announcements for 2024, and we’re only in March!

1/ 🧬Not one, but **four** Open2C packages have been accepted as @NumFOCUS #affiliated projects!!! 🎉 #cooler #cooltools #pairtools and #bioframe We are proud to join the #NumFOCUS family and we look forward to working with the vibrant #scientific #opensource community!

See documentation at pairtools.readthedocs.io or pipe your data through our pairtools-powered pipeline distiller github.com/open2c/distill…. Feedback, questions, and pull requests welcome!

This is the third preprint from @Open2C_team, and was an incredibly collaborative work, with researchers from 6 labs spanning 8 timezones. We hope future software can involve new collaborators as well. Join us on Slack (bit.ly/open2c-slack) and get involved!

If you work with #3Dgenome 3C+ data (Hi-C, Micro-C, ...), check out pairtools (biorxiv.org/content/10.110…)!