Brewsci

Big fan of the Gemmi toolkit for #xtallography (@ccp4_mx / GΦL), and its cif & mtz command-line tools. Now also available via : 💻 `brew tap brewsci/bio; brew install gemmi` 👏 @MacHomebrew & @brew_sci

🎉 New formula biointerchange in Brewsci/bio for Linux and macOS! ℹ️ Genomic linked-data converter: an interchange GFF, GVF, VCF files via JSON-LD 🍺 brew install brewsci/bio/biointerchange 🏡 github.com/BioInterchange… 🔬 github.com/brewsci/homebr… #bioinformatics

🎉 New formula krona in Brewsci/bio for Linux and macOS! ℹ️ Interactively explore metagenomes and more from a web browser 🍺 brew install brewsci/bio/krona 🏡 github.com/marbl/Krona/wi… 📖 doi.org/10.1186/1471-2… 🔬 github.com/brewsci/homebr… 🐧 brew.sh #bioinformatics

Just added PAML 4.9j to Homebrew for macOS. To install it, you will need brewsci/bio: `brew tap brewsci/bio; brew install paml`. And the good news? It will automatically work on Mac ARM M1 architecture! @MacHomebrew @brew_sci

🎉 New formula clipper4coot in Brewsci/bio for Linux and macOS! ℹ️ Crystallographic automation and complex data manipulation libraries 🍺 brew install brewsci/bio/clipper4coot 🏡 www2.mrc-lmb.cam.ac.uk 🔬 github.com/brewsci/homebr… 🐧 brew.sh #bioinformatics

🎉 New formula ssm in Brewsci/bio for Linux and macOS! ℹ️ Secondary-structure matching, tool for fast protein structure alignment 🍺 brew install brewsci/bio/ssm 🏡 www2.mrc-lmb.cam.ac.uk 📖 doi.org/10.1107/S09074… 🔬 github.com/brewsci/homebr… #bioinformatics

🎉 New formula libccp4 in Brewsci/bio for Linux and macOS! ℹ️ Protein X-ray crystallography toolkit 🍺 brew install brewsci/bio/libccp4 🏡 ccp4.ac.uk 🔬 github.com/brewsci/homebr… 🐧 brew.sh #bioinformatics

🎉 New formula mmdb2 in Brewsci/bio for Linux and macOS! ℹ️ C++ toolkit for working with macromolecular coordinate files 🍺 brew install brewsci/bio/mmdb2 🏡 www2.mrc-lmb.cam.ac.uk 🔬 github.com/brewsci/homebr… 🐧 brew.sh #bioinformatics

🎉 New formula raster3d in Brewsci/bio for Linux and macOS! ℹ️ Set of tools for generating high quality raster images of proteins 🍺 brew install brewsci/bio/raster3d 🏡 bmsc.washington.edu/raster3d 📖 doi.org/10.1016/S0263-… 🔬 github.com/brewsci/homebr… #bioinformatics

🎉 New formula faqcs in Brewsci/bio for Linux and macOS! ℹ️ Quality Control of Next Generation Sequencing Data 🍺 brew install brewsci/bio/faqcs 🏡 github.com/LANL-Bioinform… 📖 doi.org/10.1186/s12859… 🔬 github.com/brewsci/homebr… 🐧 brew.sh #bioinformatics

🎉 New formula falco in Brewsci/bio for Linux and macOS! ℹ️ C++ implementation of FastQC for quality control of sequencing data 🍺 brew install brewsci/bio/falco 🏡 github.com/smithlabcode/f… 📖 doi.org/10.12688/f1000… 🔬 github.com/brewsci/homebr… #bioinformatics

🎉 New formula slim in Brewsci/bio for Linux and macOS! ℹ️ Forward simulator for population genetics and evolutionary biology 🍺 brew install brewsci/bio/slim 🏡 messerlab.org/slim/ 📖 doi.org/10.1093/molbev… 🔬 github.com/brewsci/homebr… #bioinformatics

🎉 New formula plink2 in Brewsci/bio for Linux and macOS! ℹ️ Analyze genotype and phenotype data 🍺 brew install brewsci/bio/plink2 🏡 cog-genomics.org/plink2 📖 doi.org/10.1186/s13742… 🔬 github.com/brewsci/homebr… 🐧 brew.sh #bioinformatics

🎉 New formula jmol in Brewsci/bio for Linux and macOS! ℹ️ Open-source Java viewer for chemical structures in 3D 🍺 brew install brewsci/bio/jmol 🏡 jmol.sourceforge.io 🔬 github.com/brewsci/homebr… 🐧 brew.sh #bioinformatics

Do you use Homebrew Python? You may not realize this, but Homebrew Python is not meant for you. My latest article explains why, as well as what I think you should use instead when developing with #Python. 🐍 justinmayer.com/posts/homebrew…

Homebrew taps (3rd-party repositories) now support a GitHub Actions-based workflow hosting their bottles (binary packages) on GitHub Releases (rather than Bintray). This should make it significantly easier to distribute macOS and/or Linux bottles. brew.sh/2020/11/18/hom…

🎉 New formula tmalign in Brewsci/bio for Linux and macOS! ℹ️ Protein structure alignment algorithm based on the TM-score 🍺 brew install brewsci/bio/tmalign 🏡 zhanglab.ccmb.med.umich.edu/TM-align/ 📖 doi.org/10.1093/nar/gk… 🔬 github.com/brewsci/homebr… brew.sh #bioinformatics

🎉 New formula mican in Brewsci/bio for Linux and macOS! ℹ️ Structure alignment algorithm that can handle Multiple-chain complexes 🍺 brew install brewsci/bio/mican 🏡 tbp.cse.nagoya-u.ac.jp/MICAN 📖 doi.org/10.1186/1471-2… 🍻 brew.sh #bioinformatics

🎉 New formula percolator in Brewsci/bio for Linux and macOS! ℹ️ Semi-supervised learning for peptide identification from shotgun proteomics data 🍺 brew install brewsci/bio/percolator 🏡 percolator.ms 📖 doi.org/10.1038/nmeth1… 🍻brew.sh #bioinformatics