Fidel Ramírez

Our paper presenting @scverse_team - our multi-institution open-source software project to address storage and analysis needs of single-cell data - is now online in @NatureBiotech! nature.com/articles/s4158… & rdcu.be/c9yNV.

[1/20] Modeling disease directly in human tissue slice cultures transforms mechanistic studies as well as drug development and translation. A thread on our new work @biorxivpreprint. bit.ly/3H9LTnr Two amazing first authors: @niklasjlang @schniering_j @HelmholtzMunich

And that's a wrap! The 2022 Open Problems Competitions is closed 🎉 It's been astounding seeing such participation, with >1,700 competitors making >30,000 entries. This was the biggest single-cell competition ever!

The time seems ripe to Toot. Find me at @fidel_ramirez@genomic.info #Mastodon

@carolinaguerram En las carreras que he participado el agua está en vasos de papel. Hay canecas cerca de las estaciones para votar los envases. También hay reguero que recogen los organizadores. No hay necesidad de botellas plásticas.

Beautiful Scanpy plots in many HCA presentations! #HCA2022GM

Currently at the Human Cell Atlas general meeting. It is really nice to be able to network again #HCA2022GM

Scanpy 1.9.0 is out! Some new features/ community developments: * Pearson residuals normalization (by @JanLause) * New community communication channels * Workshop materials + recordings in the docs (by @marenbuettner) Check out the docs for more: scanpy.readthedocs.io

(1/n) This thread will describe recent advances in life-long learning (LL) as an essential player in the current single-cell atlases. LL in this context means building a map, and iteratively updating it with new data.blob,

Open position in our team. Join our thriving Research & Development to contribute to the discovery of breakthrough therapies that will increase human health. bit.ly/PriSciCB_IR

The scvi-tools manuscript is now out in @NatureBiotech! In this thread I describe a bit about what scvi-tools can do for you. nature.com/articles/s4158…

Squidpy 🌌🍤🐍🎉 is out in @naturemethods ! Truly collab effort with @HannahSpitzer1 Michal Klein @fabian_theis lab! nature.com/articles/s4159…

I wrote a piece on what we know about #omicron Yes, I actually spent enough time off the phone and twitter to write a proper article… Thread to come tomorrow, taking a night off science.org/content/articl…

@KevinBlighe @stephantual Congratulations!

@bjoerngruening @dpryan79 @UniFreiburg @mpi_ie @StreetScienceCo Thanks Björn. Never thought I was going to see DeepTool at high-school! What is next? single-cell?

What a great talk from Christine about #usegalaxy for teaching and training at the university level, high school level, & citizen science! Included was a huge shout-out to #deeptools (@fidel_ramirez @dpryan79) @UniFreiburg @mpi_ie @StreetScienceCo #denbi

My cartoon for yesterday’s @guardianreview #kafka #lockdown

Congratulations to the scanpy team for this new release. I am thrilled to see scanpy's 'ecosystem' continuous growth and addition of new external tools.

Just made a release candidate for scanpy 1.7.0! We’ll be making a full release in a couple weeks, but would love to catch some bugs before then! pip install “scanpy==1.7.0rc1” scanpy.readthedocs.io/en/1.7.0rc1/

@sgarciac4 Las ilustraciones son de tíos con sobrinos de otro planeta?

@sgarciac4 Mis hijos cuentan como de otro planeta?

El libro de cuentos que escribió mi mamá para mis hijos: amazon.com/Cuentos-para-n…