morpheus

It is out! The new 🎉 Morpheus v2 🎉 is now available for Windows, Mac OSX and Linux. An overview of all the goodies in this new blog post: morpheus.gitlab.io/blog/2018/10/2… Please upgrade and spread the word.

Check out the @EBItraining virtual course on "Mathematics of life" with spatial modelling and reproducible modelling. Including a Morpheus tutorial by @morpheus_lab/@zih_tud!

@AlvaroKohn You‘re welcome ☺️

And I must say I am loving the latest @morpheus_lab version v2.2.0, congrats to all developers 👏👏👏

Today I am doing again a hands-on session @Fysikk_UniOslo on multicellular and multiscale modeling using @morpheus_lab as part of this wonderful course uio.no/studier/emner/… organized by @dagdysthe

Check out the @EBItraining virtual course on 'Mathematics of life' with spatial modelling and reproducible modelling. Including a Morpheus tutorial!

New research from Beck and colleagues: "Stochastic simulations and parameter estimation for multiple-hitting T cells" - read it here: plos.io/2DVH2YV

3/4 We @JanHasenauer lab @ICBMunich developed the #HPC ready tool #pyABC (github.com/icb-dcm/pyabc), with e.g. self-tuned distances and proposal kernels. Together with @morpheus_lab we develop the @FitMultiCell platform tailored to multi-cellular systems. #YoungScientistsHMGU

Growing Neural Cellular Automata -- A new Distill article by @zzznah, @RandazzoEttore, @eyvindn and @drmichaellevin distill.pub/2020/growing-c…

Jörm Starruß will present our work on ABC param fitting of Morpheus simulations @icsb2019 today in Tunnel Gallery 14:10-15:30: „Integrative worflow of modelling and parameter estimation for quantitative multicellular systems biology“. More info here: fitmulticell.readthedocs.io

@margrietpalm Here, cells of two populations are created on the left and right side of the domain.

@margrietpalm Yes, you can use the AddCell plugin. Here, for instance, a cell is created every 100 time steps, in the left part of the domain.

@morpheus_lab is there a way to add cells to a running simulation? For example to simulate cells that arrive via a blood vessel.

Not in Okiwana? See our renewed Morpheus tutorials for self-paced learning morpheus.gitlab.io/courses/

@icsb2019 @combine_coord @denbiOffice Hands-on tutorials and live demos of Morpheus 2.1 will takes place October 31, 11:40 (Japan time) at the OIST Center Building, Level C, Room C210.

To all modellers in Okinawa @icsb2019: We're providing a Morpheus workshop at the satellite event organized by @COMBINE_coord and @denbiOffice. #ICSB2019 morpheus.gitlab.io/event/2019/10/…

@AlvaroKohn @Fysikk_UniOslo Great! Let us know if we can help by offering support.

This week I will be teaching part of a Biophysics course @Fysikk_UniOslo focusing on the modeling and simulation of multicellular and multiscale systems using @morpheus_lab

The 2nd #fitmulticell meeting in Heidelberg already showed great progress on the path to data-driven modeling of multi-cellular systems. Check out how we integrate #pyabc and @morpheus_lab at gitlab.com/fitmulticell!

Happy to announce that pyABC version 0.9.15 is now available. The new release of this @HPC-ready @ParameterEstimation tool provides additional interfaces to external simulators, enhanced visualisation capabilities and a more detailed documentation. github.com/ICB-DCM/pyABC/…

@drmichaellevin I recommend you @morpheus_lab those type of simulations can be run with very little effort. You can start here: morpheus.gitlab.io/blog/2018/02/0…

@rheiland @compucell3d @Chaste_Project @AndySomogyi @JochenKursawe @wdeback Probably not long enough to achieve a full, comprehensive, conclusive consensus on the complete multicell standard. But we should be able to lay the foundations.

@morpheus_lab @compucell3d @Chaste_Project @AndySomogyi @JochenKursawe @wdeback Great. How long is your meeting? 😀 jk

Day 2 of our meeting on standardization of multicellular models: a two-track hackaton 🤓 discussing and implementing (1) tools to translate models between simulators 👨‍💻 and (2) creating a multicell language specification. Check aims and program here 👇 multicellml.org/wiki/doku.php?…