UCSC Cell Browser

93 posts

UCSC Cell Browser

@cellbrowser

Interactive Single Cell Data Explorer and Data Repository Learn more: https://t.co/BE8qg1pVuJ

Santa Cruz, CA Bergabung Mayıs 2022

391 Mengikuti256 Pengikut

UCSC Cell Browser@cellbrowser·16 Eki

With the government shutdown impacting GEO submissions, we're happy to help researchers share their single-cell data in the meantime. You can easily submit datasets here: cells-submit.gi.ucsc.edu We’re not a substitute for GEO, but an alternative tool for hosting and visualizing

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UCSC Cell Browser@cellbrowser·23 Kas

🧠We've just add the Human Neural Organoid Cell Atlas to the UCSC Cell Browser! Come explore it here: hnoca.cells.ucsc.edu Big congratulations to ZhiSong He et al. and the whole team on this massive atlas!!!!👏 #singlecell #brainorganoids #developingbrain #neuraldisease

ZhiSong He 何志嵩@zhisong_he

So honor and excited as a part of the great team with @josch_f @SophieMJ_Jansen leaded by @TreutleinLab @GrayCampLab. In our @Nature study, we generated a #singlecell atlas of early #brainorganoid development, and studied regulations of cell fate decision nature.com/articles/s4158…

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UCSC Cell Browser@cellbrowser·22 Mar

Congrats to Dr. Alison Cole @Alison20132006 for her recent publication in Frontiers in Zoology! Come explore the updated Nematostella V2 Atlas. 👇 sea-anemone-atlas.cells.ucsc.edu

Ulrich Technau@UlrichTechnau

Check out our updated single cell atlas of Nematostella, by @AlisonCole: doi.org/10.1186/s12983… It was completely remapped on the new chromosome scale genome and gene annotation (PMID: 38092765), but also contains new data and analyses. Great work, Alison!

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UCSC Cell Browser me-retweet

Aparna Bhaduri@BhaduriLab·13 Eyl

@prnano9 @AllenInstitute @DanielaJDiBella @LodatoS_Lab @ArlottaLab This is just one example of how our meta-atlas can generate testable hypotheses. Check out/download our data from the UCSC Cell Browser (dev-ctx-meta-atlas.cells.ucsc.edu). (13/16)

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UCSC Cell Browser me-retweet

maximilianh@maximilianh·14 Kas

I’m at @czisinglecell2023 if you’re interested in @cellbrowser let me know

GIF

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UCSC Cell Browser@cellbrowser·3 Kas

🐁 Another amazing mouse dataset to check out! Come learn about rare newborn cells in mouse brains: …lt-mouse-brain-newborn.cells.ucsc.edu Many thanks to our submitter Ziyu Lu! @ziyu__lu #singlenucleus #snRNAseq #progenitorcells #mouse #oligodendrogenesis #neurogenesis #TrackerSci

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UCSC Cell Browser@cellbrowser·24 Eki

New rat dataset! 🐀 Come explore the rat liver atlas on the UCSC Cell Browser. rat-liver-atlas.cells.ucsc.edu Special thanks to our submitter Delaram Pouyabahar! @DelaramPB #rat #singlecell #liver #atlas #transcriptomics

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UCSC Cell Browser@cellbrowser·13 Eki

Big congratulations to Yonatan and team at UCSF on releasing their new paper in Science! 👏 You can explore this prenatal and postnatal human cortical development dataset on the UCSC Cell Browser: pre-postnatal-cortex.cells.ucsc.edu #SingleCell #humanbrain #corticaldevelopment

Yonatan Perez@Yonatan_Peretz

Check out our new paper, just released: Single-cell analysis of prenatal and postnatal human cortical development | Science science.org/doi/10.1126/sc…

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bioinformagic1an@anunicorn1um·12 Eki

Our single cell atlas from trigeminal ganglion cells was released on @cellbrowser ! Check out 🖥️ cells.ucsc.edu/?bp=trigeminal…

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UCSC Cell Browser@cellbrowser·12 Eki

🐁New mouse dataset! Come view a single cell atlas of mice trigeminal ganglion cells: trigeminal-ganglion.cells.ucsc.edu Many thanks to our submitter Cristal Villalba @anunicorn1um! #SingleCellResearch #TrigeminalGanglion #CraniofacialPain #MiceResearch

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UCSC Cell Browser@cellbrowser·4 Eki

New dataset added! 🧠Come explore this new Alzheimer's Disease and aging brain atlas across 400 human brains from the ROSMAP project. Many thanks to our submitter Carles Boix and PIs @manoliskellis @DrLiHueiTsai cells.ucsc.edu/?ds=rosmap-ad-… #agingbrain #alzheimersdisease

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UCSC Cell Browser@cellbrowser·10 Tem

We love seeing this number grow year after year 🌎🌍🌏 #Diversity #community #HCA2023GM #singlecell #humancellatlas

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UCSC Cell Browser@cellbrowser·10 Tem

Looking forward to the next 3 days of meetings! #singlecell #HCA2023GM #humancellatlas

Human Cell Atlas@humancellatlas

We’re really looking forward to #HCA2023GM starting tomorrow! To join us virtually, be sure to register at events.humancellatlas.org/2023gm/home.

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UCSC Cell Browser me-retweet

GonçaloCasteloBranco@GoCasteloBranco·15 Mar

To spatially dive into the datasets, check out the webbrowsers at: web.atlasxomics.com/visualization/… or brain-spatial-omics.cells.ucsc.edu

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Dr. Alison G. Cole@Alison20132006·30 Mar

We propose the ectodermal muscle may be a novel anthozoan muscle cell type. The single cell data is housed on the UCSC @cellbrowser! Thanks to @UlrichTechnau and all co-authors for making this possible. 4/4

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UCSC Cell Browser@cellbrowser·19 Oca

Newly published dataset! Come view snRNA-seq data of brain samples from DAP12-deficient Nasu-Hakola diseased individuals here: nhd-brain.cells.ucsc.edu Submitted by @YingyueZhou at @TheColonnaLab

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UCSC Cell Browser@cellbrowser·9 Kas

New dataset added! Come view glia diversity in the human hippocampus. hippo-lifespan.cells.ucsc.edu Submitted by @YijingSu2022 @zhoujoeyyi @Upenn_SongMing #snRNAseq #singlenucleus #transcriptomics

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UCSC Cell Browser me-retweet

Lucas Schirmer@schirmerlab·4 Kas

Thrilled to share our work on spatial cell type mapping of MS lesions spearheaded by @Cels121 and ⁦@PauBadiaM⁩ | paired single-cell & spatial transcriptomics | Thanks ⁦@saezlab⁩⁩, Simon Hametner, ⁦@DenisSchapiro⁩ ⁦@cellbrowser⁩ biorxiv.org/content/10.110…

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UCSC Cell Browser@cellbrowser·3 Kas

Sawasdee 🙏! The UCSC Team is here at the #HCA2022Asia meeting in Bangkok! Come check out our posters tomorrow Nov 4th at posters #25 and #26. #SingleCell #visualization @humancellatlas

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Jelajahi

@Alison20132006 @prnano9 @AllenInstitute @DanielaJDiBella @LodatoS_Lab @ArlottaLab @ziyu__lu @DelaramPB