AdamArkin_Lab

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AdamArkin_Lab

AdamArkin_Lab

@AdamArkinLab

Tweets from Adam Arkin's Lab @UCBerkeley @LBNLBioSci. https://t.co/tQZxk6lUwV https://t.co/ha4yp8r3MD https://t.co/JkccOaPGJa https://t.co/zBytdzkGor Tweets represent personal views only.

Berkeley, CA, USA Katılım Mayıs 2020
179 Takip Edilen1.2K Takipçiler
AdamArkin_Lab retweetledi
Vivek Mutalik
Vivek Mutalik@vivek_mutalik·
🔔 New Preprint 🎉 from phagefoundry.org 🥳 Super excited to share our work on generating systematic 95 phage-99 MDR P. aeruginosa strain interaction dataset & use of ML to predict phage susceptibility & phage cocktails from target genome sequences alone, w validations.
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Vivek Mutalik
Vivek Mutalik@vivek_mutalik·
🥳 Huge preprint 🔔 Today we share something our group has been working toward for a long time, led by @LucasMoriniere We asked can we predict which receptor a phage targets from its genome sequence alone? For most phages, we couldn’t. So Lucas set out to do something crazy!
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AdamArkin_Lab
AdamArkin_Lab@AdamArkinLab·
This is the first of a powerful set of work from this amazing team! I am extremely grateful to work with these amazing young scientists-@AveryNoonan and @LucasMoriniere, my long time colleague and friend @vivek_mutalik and the EDGE and Phage Foundry teams. This group is on fire.
Vivek Mutalik@vivek_mutalik

Posting here after a year to share: 📣 New preprint from phagefoundry.org team 📣🎊🎉 We developed a solid machine learning framework & to predict strain-level phage-host interactions across diverse bacterial genera from genome sequences alone. biorxiv.org/content/10.110…

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AdamArkin_Lab
AdamArkin_Lab@AdamArkinLab·
@victornizet @f_askarian @ARPA_H Also, big props to @kelseyehern and @j_hilzinger who have been critical in building this on the Berkeley side! Kelsey is now at Northwestern and will continue with the project. Also, it going to be fun to work with the brilliant Karsten Zengler at UCSD on this!
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Vivek Mutalik
Vivek Mutalik@vivek_mutalik·
If you are excited about gut microbiome, phages, & tools/tech to study their interactions, join/follow the awesome @_YHuang lab 🎊
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AdamArkin_Lab retweetledi
Chang Liu
Chang Liu@chang_c_liu·
In this work, we bring OrthoRep’s mutation rate up to 10^-4 substitutions per base, allowing us to durably hypermutate and evolve chosen genes in vivo at 1-million times the genomic mutation rate of the host yeast cell. What does this afford? biorxiv.org/content/10.110…
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AdamArkin_Lab retweetledi
José P. Faria
José P. Faria@jplfaria·
Today we released ModelSEED v2 in KBase (kbase.us). If you try the new tools any feedback is appreciated. ModelSEED v2: High-throughput genome-scale metabolic model reconstruction with enhanced energy biosynthesis pathway prediction biorxiv.org/content/10.110…
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AdamArkin_Lab
AdamArkin_Lab@AdamArkinLab·
Thanks to Rob Ferl and Krysyn van Vliet for leading us! The NAS staff, the folk who briefed us and helped with the analysis of the large scale proposed studies, and the panel members were all an honor to work with-- and more importantly--fun!
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AdamArkin_Lab
AdamArkin_Lab@AdamArkinLab·
The full report is: nap.nationalacademies.org/catalog/26750/… For those of us interested in the bioengineering side check out "Bioregenerative Life Support Systems" (BLiSS) and "Manufacturing Materials and Processes for Sustainability in Space" (MATRICES)!
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AdamArkin_Lab
AdamArkin_Lab@AdamArkinLab·
It was great to work with the NAS team helping to thing of the next decade of biology of in space. Just released! Thriving in Space: Decadal Survey for the Biological and Physical Sciences in Space Explore the digital interactive summary: nap.nationalacademies.org/resource/26750…
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AdamArkin_Lab retweetledi
Vivek Mutalik
Vivek Mutalik@vivek_mutalik·
First round of positions open💥. If interested, please apply. Project Scientist (Phage Foundry) - lbl.taleo.net/careersection/… Postdoctoral Fellow (Phage Foundry) - lbl.taleo.net/careersection/… Research Associate (Phage Foundry) - lbl.taleo.net/careersection/…
Phage Directory@phagedirectory

Congrats to @vivek_mutalik and colleagues, who have received funding from the BRaVE initiative (US Dept of Energy) to expand their #Phage Foundry, a platform for phage countermeasures against #AMR pathogens. buff.ly/3RgTCFR

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Keşfet

@LucasMoriniere @AveryNoonan @vivek_mutalik @victornizet @f_askarian @ARPA_H @kelseyehern @CharlesCockell