Dr. Anna Ramisch

351 posts

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Dr. Anna Ramisch

Dr. Anna Ramisch

@AnnaRamisch

CompBio Postdoc interested in HumanGenetics, NeuroEpigenomics & Addiction @unige_en

Geneva, Switzerland Katılım Aralık 2014
420 Takip Edilen265 Takipçiler
Dr. Anna Ramisch retweetledi
Alena van Bömmel
Alena van Bömmel@aja_mys·
🔥🧬Finally out!🧬🔥 Check out our latest study in Nature Genetics uncovering a surprising phenomenon of convergent co-regulated promoters cocoProms doi.org/10.1038/s41588… 🧑‍🤝‍🧑I'm happy to be part of such an amazing team! 🧵
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Kerrin Small
Kerrin Small@kerrin_small·
Very excited to share that our manuscript on cis-eQTL analysis of adipose tissue gene expression in 2,344 samples is now out in Nature Genetics rdcu.be/d5ov4 See thread from lead author @SarahBrotman below
Sarah Brotman@SarahBrotman

I’m excited to share that this manuscript is now published in Nature Genetics! 🧪🧬 🖥️ nature.com/articles/s4158… The AdipoExpress data can be accessed here: zenodo.org/records/138451… An interactive browser of the colocalization results can be accessed here: adipose.colocus.app

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Bjørt Katrinardóttir Kragesteen
Bjørt Katrinardóttir Kragesteen@Katrinardottir·
I'm very excited to share that I’ve started as a group leader @karolinskainst. I am looking for curious, enthusiastic and collaborative postdocs and assistants (pre-PhD) to join us to decipher regulation of hypoxia cell states that govern systems oxygen homeostasis 1/3
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Dr. Anna Ramisch
Dr. Anna Ramisch@AnnaRamisch·
So happy that our preprint is finally out! If you're interested in the advantages of long-read direct RNA sequencing in population studies, this is for you.
Aline Réal@aline_real25

I am excited to share our new preprint with @anavinuela, @AnnaRamisch, @arnsbr, and @dermitzakis! We used direct RNA long-read seq on 60 LCLs from the 1000 Genomes Project to study genetic regulation of transcript abundance & RNA modifications (m6A). researchsquare.com/article/rs-461….

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Andrew Brown
Andrew Brown@arnsbr·
Really happy for @aline_real25 to be getting this out. Major implication for me is I've always assumed gwas hits will be explained by expression as it has to mediate then. But here @aline_real25 shows these expression effects can take many forms, not all picked up by common tech
Aline Réal@aline_real25

I am excited to share our new preprint with @anavinuela, @AnnaRamisch, @arnsbr, and @dermitzakis! We used direct RNA long-read seq on 60 LCLs from the 1000 Genomes Project to study genetic regulation of transcript abundance & RNA modifications (m6A). researchsquare.com/article/rs-461….

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Denis Duboule
Denis Duboule@Duboule·
We are looking for a bioinformatician @cdf1530 @CirbCdf in Paris to analyse genomic/epigenetic datasets🧬 in the context of a synergy @ERC_Research long term program. See below and apply😎 RT🙏
Denis Duboule tweet mediaDenis Duboule tweet media
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Madison (Honer) Lineberger
Madison (Honer) Lineberger@madisonahoner·
‼️New Epigenetics Review ‼️ Read here at @GenesDev where we discuss brief history of various epigenetic modulator classes 🧬, their links to multiple disease types 😷, and their potential for (combined or novel) therapeutic targeting 💊! m.genesdev.cshlp.org/content/early/…
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Simon Braun
Simon Braun@smgbraun·
Check out our lab's recent #preprint by Hanna Schwaemmle and our collaborators @unige_en. We asked how do cells assemble functional SWI/SNF chromatin remodeling complexes? The key is to make just the right amount of each subunit! biorxiv.org/content/10.110…
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Etienne Sollier
Etienne Sollier@EtienneSollier·
Figeno, my visualization tool for genomics🎨🧬, is now published in Bioinformatics! doi.org/10.1093/bioinf… It can generate publication-quality figures for sequencing data along genomic coordinates: bigwig, HiC, @nanopore data with base modifications, and WGS with CNAs and SVs.
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Evgeny Kvon
Evgeny Kvon@evgenykvon·
How do enhancers work over distances that sometimes exceed megabases? Excited to share our work led by @gracecbower where we uncover a unique sequence signature globally associated with long-range enhancer-promoter interactions in developing limb buds: biorxiv.org/content/10.110… 1/
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Zhen Miao
Zhen Miao@ZhenMiao2·
Inspired by @lpachter and team's exploration of scRNA-seq pipelines, we face similar challenges in scATAC-seq, only magnified! After 5 years of tackling these inconsistencies with my advisor @JunhyongKim , Here is a summary (and some solutions😃) 1/n #Genomics #Bioinformatics
Lior Pachter@lpachter

The choice of whether to use Seurat or Scanpy for single-cell RNA-seq analysis typically comes down to a preference of R vs. Python. But do they produce the same results? In biorxiv.org/content/10.110… w/ @Josephmrich et al. we take a close look. The results are 👀 1/🧵

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Keşfet

@SarahBrotman @NatMachIntell @fabian_theis @karolinskainst @aja_mys @i_jerko @aline_real25 @anavinuela