Joey Bose

1.7K posts

Joey Bose

Joey Bose

@bose_joey

Assistant Professor @imperialcollege and @Mila_Quebec Affiliate member. Into Geometry ⋃ Generative Models ⋃ AI4Science. Ex-@UniofOxford, @Mila_Quebec, @UofT.

London Katılım Ocak 2018
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Joey Bose
Joey Bose@bose_joey·
🎉Personal update: I'm thrilled to announce that I'm joining Imperial College London @imperialcollege as an Assistant Professor of Computing @ICComputing starting January 2026. My future lab and I will continue to work on building better Generative Models 🤖, the hardest AI4Science applications in computational biology 🧬and chemistry 🧪, and also a sprinkling of Deep Learning theory 📚 that supports these goals.
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Joey Bose
Joey Bose@bose_joey·
@wognsfjq96 @andreamiele_ Thanks for making these connections explicit! In AF3 recycling, there is also no backprop through the iterations, but I do agree that self-conditioning using a standard denoising prediction with stop grad is quite cool!
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Jaehoon Yoo
Jaehoon Yoo@wognsfjq96·
@bose_joey @andreamiele_ One thing we find interesting about self-conditioning is that it seems to show fixed-point-like behavior even without backpropagating through the iterations or convergence. In practice, standard denoising training with a stop-gradient on the previous prediction seems to be enough
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Jaehoon Yoo
Jaehoon Yoo@wognsfjq96·
Self-conditioning can be distilled into one-step language generation. We show that self-conditioned flow LMs perform fixed-point iteration, and introduce fixed-point flow maps to compress both the iterations and the entire flow. At one step, FMLM★ achieves 112.5 gPPL at near-data entropy (5.37), substantially improving over FMLM’s 168.3 gPPL at 5.17 entropy. FMLM★ also achieves the best 2–4 step results. 📎 Paper: arxiv.org/abs/2607.00714 ⌨️ Code: github.com/Ugness/self-co…
Jaehoon Yoo tweet media
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Joey Bose
Joey Bose@bose_joey·
@wognsfjq96 @andreamiele_ Can you comment on how this relates to known self-conditioning mechanisms like recycling in AlphaFold 3 and Deep Equilibrium model ideas as used in diffusion models? These ideas seem quite related to me but not sure if you see them the same way.
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Jaehoon Yoo
Jaehoon Yoo@wognsfjq96·
@andreamiele_ Thanks! We believe this structure is universal and can be adapted to many other generative/predictive systems.
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Joey Bose retweetledi
Dhruvesh Patel ✈️ ICML 2026
We will be presenting our poster today at 4-5pm at the #SPIGM workshop at #ICML2026. If you are working on diffusion for text, either using discrete or continuous space approaches, you will find our results interested. Come chat with us. With @rozonoyer96703 and Jacopo Minniti.
Tim G. J. Rudner@timrudner

What if diffusion models could think ahead instead of being greedy at every step?🤔 We introduce: Learned Relay Representations for Forward-Thinking Discrete Diffusion Models

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Joey Bose
Joey Bose@bose_joey·
We're presenting DeCAF ☕️: A few-step cofolding model with all-atom flow maps at the GenBio workshop at #ICML2026 as a Spotlight in the morning poster session!! Also, we've now released the code and checkpoints from the paper: code🧑‍💻: github.com/genesistherape… paper🔗: arxiv.org/abs/2606.08375 Come by and say hi 👋!
Joey Bose@bose_joey

Protein–ligand cofolding models are getting incredibly powerful… but do they have to be so slow? 🧬🐢💊 Our new preprint introduces a new flow-map framework called DeCAF for fast few-step cofolding — up to 5× faster while preserving sample quality on the SOTA Pearl model and 20x faster than Boltz 1x. ⚡🧵 📜 Blog: genesis.ml/news/genesis-m… 🔗arXiv: arxiv.org/abs/2606.08375 Code (coming soon): github.com/genesistherape…

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Marta Skreta
Marta Skreta@martoskreto·
Riemannian MeanFlow 🌀🌊 will be at #ICML2026! (don’t worry though, it’s actually a pretty NiceFlow 😎) RMF extends the MeanFlow framework to Riemannian manifolds by learning average velocities directly on the manifold -- this enables fast generation of biomolecules in high dimensions. ⚡️ RMF can generate discrete DNA sequences on the simplex manifold — language flow maps in biology! 🧬 We also show that reward guidance can generate proteins and DNA with structures or functions that we want using fewer steps. 🏆 Huge congrats to @dywoo1247 who led this project and worked incredibly hard to identify the best losses and practices for training these challenging models 🔥 had an awesome time working on this with @hyuunnnnnn, @k_neklyudov, and @sungsoo_ahn_ 🤗 also, if you like this work, check out GFM from Davis et al. who approach the same problem from a different angle :)
Dongyeop Woo@dywoo1247

Can we perform high-quality generative modeling on Riemannian manifolds — in just one forward pass? Introducing Riemannian MeanFlow (RMF) — with @martoskreto, @hyuunnnnnn, @k_neklyudov & @sungsoo_ahn_ 🧵👇 [1/7]

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Sander Dieleman
Sander Dieleman@sedielem·
📢 Diffusion circle at @icmlconf 2026: join us Thursday July 9 at 3:30PM at the information desk / job board, we'll head out from there and find a spot to sit. No agenda, just get together and talk shop. Please tell your friends and tag people who might be interested!
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Gangnam-gu, Republic of Korea 🇰🇷 English
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Lars Holdijk
Lars Holdijk@HoldijkLars·
Our book "Generative AI and Stochastic Thermodynamics: A Tale of Free Energies" is out this month. Over the coming weeks @sirui_lu97, @wellingmax and I will post about some of the topics it covers. Starting it off: heat and work in latent variable models and variational EM.
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Joey Bose
Joey Bose@bose_joey·
I'm attending #ICML2026, presenting a couple papers: 1. "Autoregressive Boltzmann Generators" (Spotlight) arxiv.org/abs/2606.27361 and 2. Few-Step CoFolding with All-Atom Flow Maps---i.e., the DeCAF paper ☕️ (Spotlight) at the GenBio workshop. arxiv.org/pdf/2606.08375 Happy to meet old friends and make new ones! DMs open :)
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Jonas Köhler
Jonas Köhler@jonkhler·
@danyalrehman17 Awesome work! That is one of the most exciting papers I saw in the last year :)
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Joey Bose
Joey Bose@bose_joey·
@FrankNoeBerlin Thanks 🙏. Couldn't agree more about making some progress on BGs!
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Frank Noe
Frank Noe@FrankNoeBerlin·
@bose_joey Making progress on Boltzmann Generators is never stupid 😅 Congratulations!
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Joey Bose
Joey Bose@bose_joey·
Can we break free from the tyranny of diffusion and flow matching for atomistic molecular generation 👀? Turns out we can reliablyn scale an Autoregressive model with simplest and perhaps stupidest approach 😅. Check out the new #ICML2026 spotlight paper Autoregressive Boltzmann Generators in the quote tweet.
Danyal Rehman@danyalrehman17

🚨 Moving past continuous flows and diffusion for equilibrium sampling ⚛️ 🧵 1/6 Introducing Autoregressive Boltzmann Generators (ArBGs), our ICML 2026 Spotlight paper. By discretizing space into bins, ArBGs generate equilibrium peptide structures atom-by-atom—exactly like next-token prediction in LLMs. Proud to share this work with Charlie B. Tan, @Yoshua_Bengio, @Bose_Joey, @AlexanderTong7 🙌

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Joey Bose
Joey Bose@bose_joey·
@jonkhler Thanks for the praise 🙏. Still surprised that this worked as well it did!
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Jonas Köhler
Jonas Köhler@jonkhler·
@bose_joey Great stuff! :) remember I was daydreaming about something like this close to ten years ago but told myself: ah no, that's never feasible! Great to see proven otherwise!
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Giannis Daras
Giannis Daras@giannis_daras·
@bose_joey Tyranny of diffusion? Who are you and did you do to Joey?
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