cell_ontology

The new CL release v2024-07-10 comes with a massive new feature! 🔥 Explore the new summary in the release notes to see everything that has changed in this release! All new classes, relabels, synonyms and axioms are easily visible at a glance! 🔥 github.com/obophenotype/c…

We are delighted to announce that we have a new CL release v2024-05-15! This release contains many new cells, such as protoplasmic astrocyte or preplasmablst. Check all the updates in github.com/obophenotype/c…

🗺️ Meet MapMyCells! 🗺️ Save time mapping gene expression data to reference taxonomies. Outputs incl. cell identity and confidence scores. Available on the Brain Knowledge Platform: portal.brain-map.org/atlases-and-da… #studyBRAIN

What a better way to start the week than a new CL release! Check what is new in v2024-04-05! github.com/obophenotype/c…

Happy new year from the CL ontology!🎉 And how better to start the year than with a new CL release! Check what's new in v2024-01-04 in github.com/obophenotype/c…

The latest #CLrelease (v2023-12-05) is now available! Take a look at the new updates at github.com/obophenotype/c…

Cell Ontology (CL) has a new release: v2023-10-19 Find what is new in github.com/obophenotype/c…! Thanks to all contributors and PR reviewers.

We have retired PDXFinder - thank you to everyone who shared their models and data! You can now search for PDXs, as well as organoids and cell lines in one resource - cancermodels.org Check it out - and let us know what you think!

@BatResearch @gklambauer But if paper submissions came with links to raw image data on some archive, complete with microscope metadata, it would make fakes like this much harder to get away with arxiv.org/abs/2301.10227

@CellOntology @gklambauer Not really, inititiatives like the open microscopy environment already exist for mass data dumps.

Diffusion models used to generate realistically looking microscopy images of cells: arxiv.org/abs/2301.10227

Before @uberanat there was

Full disclosure - Some of us on the CL editorial and technical team share an office with these guys. We know how much thought and hard work has gone into making this a reality and how radical and elegant the back end redesign is.

Very happy and to see the improvements at OLS. Looking forward to regular and rapid updates of CL on the new site and excited by the new possibilities opened up by the radical redesign of the back end.

We are excited to announce the availability of the alpha version of OLS 4 at ebi.ac.uk/ols4/. An executive overview of the what, why, impact and when can be found at github.com/EBISPOT/ols4/w….

If you work in a Clinical Genetics department that recruited to the 100k Genome Project I *highly* recommend encouraging one of your clinical genetics trainees to review the top 5 exomiser results in your undiagnosed patients (particularly the trios).

We haz products! Want to check out/use the ontology described in the thread? We got you covered fam. Introducing CL-plus, which combines the good ol' CL with the provisional cell ontology (which includes the described ontology). Grab it here today: purl.obolibrary.org/obo/cl/cl-plus…

Please save the date, July 10-12, for the 2023 HCA General Meeting, which will now be held in Toronto, Canada (please note new location). Look out for more information soon. #HCA2023GM

Everything running 100% again 🥳

Cool stuff is in the works! However there will be a short down period for the purls, don't be alarmed if your purls no longer resolve, it will be up again in no time!

1. Thrilled and proud to announce our latest preprint: Spectra -Supervised discovery of interpretable gene programs from single-cell data. It is a factorization method that really works and is already in intensive use across projects in my own lab --> doi.org/10.1101/2022.1…