Fani Memi

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Fani Memi

Fani Memi

@FaniMemi

Dev neurobiologist in Bayraktar lab @sangerinstitute, Research Associate @Peterhouse_cam,brain development,spatial omics, evolution, genomics, books and coffee.

Cambridge, England Katılım Eylül 2013
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Alfonso Martinez Arias
Alfonso Martinez Arias@AMartinezArias·
Beautiful, thorough, personal in places, memoir of John Gurdon from Eddy de Robertis, disciple and friend. Å #MustRead about a generation and a time from which we have moved on but that laid the foundation for contemporary biology. sciencedirect.com/science/articl…
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Omer Ali Bayraktar
Omer Ali Bayraktar@bayraktar_lab·
our work mapping the molecular + cellular progression of lung damage in severe COVID-19 is out @NatureComms ! A covid side project that turned into a labour of love over the years & really happy @THJimmyLee & Sam pushed this collaboration over the line. nature.com/articles/s4146…
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Omer Ali Bayraktar
Omer Ali Bayraktar@bayraktar_lab·
Awesome tool from @mo_lotfollahi lab to define tissue niches in spatial data based on inferred cell communication + spatial proximity. Glad we could corrupt you from sc data to spatial :)
Mo Lotfollahi@mo_lotfollahi

(1/n) The first preprint from our lab is now out in @NatureGenet! We tried to tackle a key challenge in spatial biology to quantitatively characterizing cellular niches by learning spatial gene programs using NicheCompas led by @SebastianBirk_. Paper: shorturl.at/b4Hjk

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Dr Naomi Moris
Dr Naomi Moris@nmoris·
🧫Looking for a PhD to start Autumn 2025? We're recruiting! 🧪 The project will focus on using #embryomodels to explore #development & could cover a range of specific questions. Please RT! 🙏 Apply via the portal, and get more details here: crick.ac.uk/careers-study/…
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Dylan O'Sullivan
Dylan O'Sullivan@DylanoA4·
C. S. Lewis on why we need to read old books
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GeneticsCambridge
GeneticsCambridge@GeneticsCam·
Dr Alex Cagan – illustrator, geneticist and explorer of animal DNA – is offering a new perspective on the tapestry of life. His work has profound implications for the pursuit of healthy ageing and the possibilities of cancer resistance cam.ac.uk/stories/dr-ale… via @cambridge_uni
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Koen
Koen@kjrademaker·
Happy to have been part of @bayraktar_lab's presentations on exciting and diverse spatial transcriptomics projects today at CellGen Retreat 2024! Together with @THJimmyLee, @FaniMemi and Tannia Garcia. More on spatial mapping of ASD risk genes to follow soon!
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allen institute
allen institute@AllenInstitute·
Whole, healthy human brain data is now on the ABC Atlas! Dataset incl. 3 million+ cells sampled from dissections from adult donors. Samples underwent snRNA sequencing and were clustered and categorized by neurotransmitter, region, and more. ABC Atlas: portal.brain-map.org/atlases-and-da…
GIF
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Omer Ali Bayraktar
Omer Ali Bayraktar@bayraktar_lab·
hiring for new spatial omics & ML projects on human biology with @mo_lotfollahi! Cutting edge ML meets big biological questions about human development & brain tumours + big spatial data. Pls RT!
Mo Lotfollahi@mo_lotfollahi

🧬🤖 Job Opportunity (RT plz)! @bayraktar_lab & I are on the hunt for passionate individuals at the crossroads of Machine Learning & Spatial Biology. Join us for innovative collaborations between labs at @sangerinstitute. Open to various levels: Postdoc/PhD & Predoc. Questions? Reach out! Apply now: sanger.wd3.myworkdayjobs.com/en-US/Wellcome… 🔍 For a glimpse into our projects, check out: x.com/mo_lotfollahi/… Retweet please for visibility #MachineLearning #SpatialBiology

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Omer Ali Bayraktar
Omer Ali Bayraktar@bayraktar_lab·
great tool to quantify tissue niches in spatial data and so much more - glad we could make a small contribution!
Mo Lotfollahi@mo_lotfollahi

1/n: 🔬We introduce NicheCompass (NC) a graph learning model to build spatial atlases across millions of cells, quantitatively characterize cell niches, infer cellular communication, and map new data into these atlases. NC can be used with various spatial technologies, ranging from cellular to subcellular resolution including even multimodal approaches. We have explored interesting biology by analyzing cell niches spanning from development to cancer. Led by @SebastianBirk_ in a fun colab with @cartalop: paper: tinyurl.com/yht27w8h

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Juan Eugenio Iglesias
Juan Eugenio Iglesias@JuanEugenioIgl1·
After seven (7!) years of work with >20 researchers at 10 different institutions, we are super excited to release NextBrain, a next-gen probabilistic atlas of the human brain with 333 regions: github-pages.ucl.ac.uk/NextBrain Preprint, data, code, videos, and much more in this 🧵(1/5)
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Cell
Cell@CellCellPress·
Now online! Microglia maintain structural integrity during fetal brain morphogenesis dlvr.it/T2PFmz
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Keşfet

@NatureComms @THJimmyLee @mo_lotfollahi @GeneticsCam @UCBerkeley @sangerinstitute @KontouD @ecochangegroup