Daniel Geiszler

519 posts

Daniel Geiszler

Daniel Geiszler

@GeiszlerDaniel

computational proteomics: single-cell, PTMs, DIA. You can call me Danny.

Boston, MA Katılım Mart 2020
417 Takip Edilen284 Takipçiler
Daniel Geiszler
Daniel Geiszler@GeiszlerDaniel·
@jjacky @vikings_ace Do you have a toy example and/or numbers for speed requirements? For that scale it doesn’t seem like an awfully hard problem.
English
0
0
1
39
jacky
jacky@jjacky·
@vikings_ace realtime search of api responses, i.e. you are querying your zendesk tickets in realtime with 1,000+ tickets, you want to be able to use semantic search to find the 10 most relevant tickets w/o the need to pre-process this is an actual problem i'm facing while building
English
3
0
0
399
jacky
jacky@jjacky·
whoever invents realtime vector/fulltextsearch without needing a pre-processing step, just like grep, is going to become a billionaire
English
32
6
397
57.6K
Daniel Geiszler retweetledi
Lior Pachter
Lior Pachter@lpachter·
The new eLife model championed by @mbeisen has enabled an apples-to-apples comparison of machine and peer review. That's because the machine can review the submitted paper (preprint) which @eLife makes available, and the peer reviews are also published. biorxiv.org/content/10.648… 1/
Lior Pachter tweet media
English
11
54
243
46.2K
Daniel Geiszler
Daniel Geiszler@GeiszlerDaniel·
@neelsomani It would be great to know what the replication rate here is if you did this again. Are the correct ones random hits, or do you always recover these “easy” ones?
English
0
0
1
767
Neel Somani
Neel Somani@neelsomani·
You might be wondering if there are more Erdos problems that GPT 5.2 Pro or Deep Research can solve. I recruited a team of bright undergraduates to construct a dataset of ChatGPT responses to every open Erdos problem and validate the output. Here's what they found (all open source - repo below):
Neel Somani tweet media
Neel Somani@neelsomani

Weekend win: The proof I submitted for Erdos Problem #397 was accepted by Terence Tao. The proof was generated by GPT 5.2 Pro and formalized with Harmonic. Many open problems are sitting there, waiting for someone to prompt ChatGPT to solve them:

English
22
53
494
109.1K
Daniel Geiszler retweetledi
Paul Graham
Paul Graham@paulg·
If someone had predicted before the last election that if Trump won, federal officers would be shooting Americans in the streets, he'd have been dismissed as an alarmist.
English
1.1K
815
12.3K
2.6M
Ruxandra Teslo 🧬
Ruxandra Teslo 🧬@RuxandraTeslo·
FDA sits on a treasure trove of data: past regulatory submissions, which often span tens of thousands of pages. These would be incredibly informative, but are locked away due to trade secret law. I propose leveraging AI & bankruptcy law to unleash this info & empower start-ups.
Alec Stapp@AlecStapp

THE LAUNCH SEQUENCE A new collection of 16 essays on how to accelerate AI for science & security: ifp.org/launch The AI revolution is already delivering enormous consumer benefits. But AI progress won't automatically solve humanity's most important problems first. To get the future we want, we need to shape the trajectory of AI progress. This series is a step toward that future…

English
9
26
187
44.2K
Daniel Geiszler
Daniel Geiszler@GeiszlerDaniel·
@RuxandraTeslo @FDA Do any of the dossiers from failed startups contain drugs that were approved? Or are we feeding a bunch of failed submissions into a model?
English
0
0
0
12
Ruxandra Teslo 🧬
Ruxandra Teslo 🧬@RuxandraTeslo·
@FDA Thankfully, there is a workaround this, with relatively little money compared to the value it would bring. Set up a fund that buys the intellectual property of start-ups that go through bankruptcy. This has already been done and bankruptcy law in the US is set up to favour it!
Ruxandra Teslo 🧬 tweet mediaRuxandra Teslo 🧬 tweet media
English
2
0
3
480
rohit
rohit@krishnanrohit·
@RuxandraTeslo @WSJ Hatred isnt the right reaction but worth noting pharma also spends more on S&M vs R&D
English
7
0
17
3.1K
Ruxandra Teslo 🧬
Ruxandra Teslo 🧬@RuxandraTeslo·
Good article in @WSJ. Why does everyone hate pharma companies? They are literally the most "useful" companies, yet continously vilified. It boggles the mind. wsj.com/opinion/donald…
Ruxandra Teslo 🧬 tweet media
English
116
114
1.2K
149.2K
Daniel Geiszler
Daniel Geiszler@GeiszlerDaniel·
@PracheeAC I’ve been saying that the real potential here is in methods development. Look at LASSO… ubiquitous in data science today, discovered and popularized by a stats professor in 1996. Except it had already been used for 10 years in geophysics. en.m.wikipedia.org/wiki/Lasso_(st…
English
0
0
1
161
Prachee Avasthi
Prachee Avasthi@PracheeAC·
I think a dramatically underappreciated feature of LLMs is the value-add of scientists being able to read and engage with science outside where we have the most specialized expertise. This isn’t to suggest they are currently replacing experts but it puts a much greater range of science on the table so we can be influenced by concepts in other fields…. increasing the ability to leverage discoveries that would have previously been siloed or waiting for the polymaths that happened to unlock the connections. Cross-disciplinary insights are more possible than ever and will only continue to improve
English
3
2
31
2.8K
Daniel Geiszler retweetledi
Nature Methods
Nature Methods@naturemethods·
Assessing error control is fundamental in mass spectrometry-based proteomics. Authors introduce a theoretical foundation for entrapment experiments along with a method for more accurate evaluation of FDR control. nature.com/articles/s4159…
English
0
6
20
4.8K
alex rubinsteyn
alex rubinsteyn@iskander·
@carlosbtcosta Instead of surrogate endpoints, why not focus on most severe manifestations of a disease (eg cancers with <1y survival)?
English
2
0
1
226
alex rubinsteyn
alex rubinsteyn@iskander·
Let’s dream a bit. How would you dramatically reorg biotech research / drug development to make dramatically faster progress towards curative therapies? (Don’t say “use AI”, hypothesis/candidate generation under current structure isn’t a bottleneck)
English
38
10
94
19.1K
Steve Hou
Steve Hou@stevehou·
I keep forgetting Australia is still there. What’s something in my life that’s impacted by Australia that I’m not thinking of?
English
12
0
8
3K
Daniel Geiszler
Daniel Geiszler@GeiszlerDaniel·
@kareem_carr This is a bad example because LLMs are extrapolators, not interpolators. “We empirically and theoretically argue against those two points and demonstrate that on any high-dimensional (> 100) dataset, interpolation almost surely never happens.” arxiv.org/abs/2110.09485
English
0
2
4
392
Dr Kareem Carr
Dr Kareem Carr@kareem_carr·
Very simply, statistics is about taking two points you know exist and drawing a line between them, basically completing patterns. Sometimes that middle point is something that exists in the physical world, sometimes it’s something that could potentially exist, but doesn’t.
Dr Kareem Carr tweet media
English
14
106
1.7K
72.7K
Dr Kareem Carr
Dr Kareem Carr@kareem_carr·
If you think about how statistics works it’s extremely obvious why a model built on purely statistical patterns would “hallucinate”. Explanation in next tweet.
Dr Kareem Carr tweet media
English
139
898
10.1K
944.2K
Daniel Geiszler
Daniel Geiszler@GeiszlerDaniel·
@pitdesi Starbucks a successful Italian boomerang? There are 20x as many stores in Turkey as Italy, which is probably more relevant.
English
0
0
0
42
Sheel Mohnot
Sheel Mohnot@pitdesi·
Chipotle is opening in Mexico. Was curious if any of these boomerang brands have been successful: Unsuccessful: Domino’s: Italy Taco Bell: Mexico (2x!) PF Changs: China Cinnabon: Sweden Successful Starbucks: Italy Pret A Manger: France Chili’s: Mexico
Sheel Mohnot tweet media
English
45
5
96
23.3K
Joe Weisenthal
Joe Weisenthal@TheStalwart·
The Treasury selloff last night cooled down
Joe Weisenthal tweet media
English
12
25
332
45.8K
Daniel Geiszler
Daniel Geiszler@GeiszlerDaniel·
@i000 @owl_posting @mattszarz I think we’ll probably need to wait until the publication comes out to see if they’ve shared technical details, but the underlying tech could be more meaningful than this output.
English
0
0
0
47
Daniel Geiszler
Daniel Geiszler@GeiszlerDaniel·
@i000 @owl_posting @mattszarz I said it elsewhere, but I think the value proposition here is in high-throughput screening and feature selection, not really de-extinction. If it really looks and acts like a dire wolf with only 20 edits out of thousands of possibilities, that’s big.
English
2
0
1
75
owl
owl@owl_posting·
its insane! i cant predict anyones take! i think the best differentiator i can find is whether or not you think the following statement is true: ‘biology as a field has barely meaningfully progressed in the last decade’ if you think its true, you’re probably pro wolf. if you say false, probably anti wolf UNLESS you believe there is a moral issue with doing undercharacterized genetic edits to an animal. then you’re anti wolf either way
owl tweet media
owl@owl_posting

its actually an interesting split of people hard to predict who will be on one side or the other im pro wolf fwiw

English
18
6
55
10.4K