@erikgarrison Pangenome workshop and conference this coming week.
English
genenetwork
373 posts
genenetwork
@GeneNetwork2
GeneNetwork is a free FOSS FAIR+ web service for genetics, genomics & EHR data. Precision medicine—Like GTEx but more species, realtime stats. Since Jan 1994!
Memphis, TN Katılım Ekim 2016
502 Takip Edilen174 Takipçiler
Next week in Memphis: #MemPANG23 pangenome.github.io/MemPanG23/, a workshop on the theory and practice of working with lots of genomes. Join us online next Friday June 2nd from 9:00-16:00 (CDT/UTC-5) for 6 talks on pangenomics (webinar tennesseehipaa.zoom.us/j/92881122014?…)
English
Massive overhauls of GeneNetwork databases to improve speed and to prevent table locks during updates and edits. Now using InnoDB: en.wikipedia.org/wiki/InnoDB
English
Terrific presentations by @flavia_villani & @AndresGuarahino in genetics course at UTHSC on the pangenome draft paper
biorxiv.org/content/10.110…
and paper with @erikgarrison and @v_colonna on cross-chromosome recombination in humans. Yes it happens!
biorxiv.org/search/flavia%…
English
genenetwork retweetledi
New package from our group: MetabolomicsWorkbenchAPI.jl is a Julia package to work with the Metabolomics Workbench REST service. @GeneNetwork2 @OPARProject
JuliaPackages@JuliaPackages
New package: MetabolomicsWorkbenchAPI v0.1.0 announced #JuliaLang Release notes: > - Initial release version 0.1.0 Registration: github.com/JuliaRegistrie… Repository: github.com/senresearch/Me…
English
Pjotr Prins, lead of GeneNetwork FOSS team headed up presentations at Tenth Anniversary of GNU Guix:
10years.guix.gnu.org/video/gnu-guix…
English
CHALLENGE: How to keep genetic and genomic data unidentifiable but sharable?@erikgarrison @pjotrprins and @RichardMott7)are making progress toward this key challenge in individualized health care.
Pangenomes need protection too! Here is Erik’s latest
privvg.github.io/2022/09/24/pra…
English
Several user interface upgrades and addition of icons to GeneNetwork’s main Search page today (25Sep2022).
Thanks to Zach Sloan.
English
@sysgenschool And our four groups and their areas of focus.
Of course significant complementarity and intentional overlap.
And your own questions and tests.
@rupertoverall @KMozhui
English
@sysgenschool Judea Pearl’s #Book of Why definitely worth reading if you are interested in causal modeling and the synthesis @rupertoverall mentioned in presentation. And lots of genetics too. Highly recommended.
en.m.wikipedia.org/wiki/The_Book_…
English
GeneNetwork is working beautifully at Day 1 of @SysGenSchool
More intense use coming soon.
English
genenetwork retweetledi
We develop a method for high-throughput frailty assessment using machine vision is out @NatureAging. We worked with Gary Churchill and @NathanShockCtrs This tech will enable scalable and objective aging studies. Detailed tweet to follow. rdcu.be/cTLJi
English
Rupert highlighting boolean networks for ageing and metabolism @sysgenschool
He is using Minerva for this work. We will be test driving this week.
English
genenetwork retweetledi
plot your data.
plot your data.
plot your data.
plot your data.
plot your data.
English
Cool resources for @sysgenschool from Rupert Overall are here:
rupertoverall.net/software/
English
Cool resources for @sysgenschool from Rupert Overall are here:
rupertoverall.net/software/
English
Great Hacker News thread on user interface design and optimization. It hard and a community effort—
news.ycombinator.com/item?id=321479…
English
Hey GN coding team— to say but correlations are running VERY SLOWLY today, even against BXD phenotypes. What gives? Took 262 seconds. Is one process competing with another?
English
Worth following Albert Rapp @rappa753 . Code we might use for improved GUIs.
Albert Rapp@rappa753
I am rebuilding my #rstats blog from the bottom up with #quarto. This will let me use quarto's cool new tricks like tabs and easy columns. I've already spent hours using quarto's great docs to build a custom blog. If you want to do the same, let me show you what I did.
English