Jakob Vanhoefer
58 posts
Jakob Vanhoefer
@JVanhoefer
PhD Student in the group of @JanHasenauer @UniBonn
Bonn, Deutschland Katılım Eylül 2018
151 Takip Edilen53 Takipçiler
🙏 I am honored to be awarded a @jherzstiftung Joachim Herz Add-On Fellowship for Interdisciplinary Life Science! 🧬🧑🔬 #AddOnFellowships
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Probably one of the most stunning results of our = @JanHasenauer|s research group:
Federated learning has a HUGHE security issue: Data can recovered completely, only using the covariance function, which basically all federated learning frameworks have!
biorxiv.org/content/10.110…
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Jakob Vanhoefer retweetledi
🎒Summer school: 𝐈𝐧𝐯𝐞𝐫𝐬𝐞 𝐩𝐫𝐨𝐛𝐥𝐞𝐦𝐬 𝐟𝐨𝐫 𝐦𝐮𝐥𝐭𝐢-𝐬𝐜𝐚𝐥𝐞 𝐦𝐨𝐝𝐞𝐥𝐬
💬With: Linda Petzold, Christiane Fuchs, @dennisprangle, @StefanEngblom, @A_Hellander
⏰August 22-26
📌@HCM_Bonn
✏️Details+register: hcm.uni-bonn.de/events/eventpa…
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Wir = LightningPose freuen uns wirklich riesig! Vielen Dank und wir sind gespannt, wie sich das Projekt weiter entwickelt!
Transfer Center enaCom@enaCom_UniBonn
Prämierung des 1. Ideenwettbewerbs: Preis der Universitätsstiftung ging an Raketenstart! Der enaCom-Preis an aimed analytics! Der Sonderpreis des Digitalhub Bonn an lightning pose! Macht unbedingt weiter!
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@cthoyt @yannik_schaelte @JanHasenauer I am not aware of an implementation either, but for fitting you anyhow only need the log-density & its derivative…
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@cthoyt @yannik_schaelte @JanHasenauer Our favorite noise models are Laplacian- and log-normal-noise. 🚀
Laplace and log-normal (= normal for log-transformed observables) are also supported by #PEtab, and our fitting pipeline of (#AMICI and #pyPESTO). So you might want to give that a try, too. 😉
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@cthoyt @yannik_schaelte @JanHasenauer Hey Charly,
our group did work on other noise models, since they might be biologically more plausible or robust to outliers.
academic.oup.com/bioinformatics…
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@cthoyt And given it was from you, it was certainly not a matter of code quality etc. … 😭🥺😱😨
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Been to one of @cthoyt's amazing introductions to python package design and it really shaped the way I write (scientific) software.
I can really recommend them (July 25, 5-8PM CEST), if you want to learn about turning python code to a clean pip-installable python package!
Olga Vitek@olgavitek
Our collaborator and friend @cthoyt is generously hosting a free webinar on designing reproducible projects with Python. This may be useful to many. Do join if your schedule permits. More info at eventbrite.de/e/reusable-rep…
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@pixieapfelbaum Dem Astronomen Tycho Brahe ist genau das (legenden halber) passiert. Lag vielleicht auch daran, dass der Gesprächspartner der König war...
#Tod" target="_blank" rel="nofollow noopener">de.wikipedia.org/wiki/Tycho_Bra…
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and apparently Nathan is called @NathanHughes__ on twitter ;)
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Last but not least: Thank you a lot to the @JOSS_TheOJ, especially @arfon, @kelly_l_rowland and our reviewers @SirSharpest and @marouenbg for their effort and helpful suggestions that improved the paper and lead to a really pleasant reviewing experience! (Crazy, right?)🚀
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Really happy to see my first first-author paper on #yaml2sbml out.
Ever had an ODE, that you wanted to simulate/fit in your standard #SBML-pipeline and wondered, how get the model to #SBML? 🚀
JOSS@JOSS_TheOJ
Just published in #JOSS_theOJ: 'yaml2sbml: Human-readable and -writable specification of ODE models and their conversion to SBML' doi.org/10.21105/joss.…
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Jakob Vanhoefer retweetledi
Well-written piece of code for converting ODE models, comes with docs, CI, tutorials. Totally recommend 👍
JOSS@JOSS_TheOJ
Just published in #JOSS_theOJ: 'yaml2sbml: Human-readable and -writable specification of ODE models and their conversion to SBML' doi.org/10.21105/joss.…
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@cthoyt Anytime ;) (and if it now would even pass unittests...)
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@sixtus @katjadoerner Nachdem das anscheinend eine Bonner Schule ist: Soll das so?
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Looking forward to present our work on easy specification of #ODE-models in #SBML with #yaml2sbml at #HARMONY2021 later today.
github.com/yaml2sbml-dev/…
COMBINE@combine_coord
Only 5 days left until #HARMONY2021 starts. Join us for lightning talks, hacking, community sessions and a bit of vision about the fufure of #COMBINE. We're looking forward to over 130 participants! co.mbine.org/events/HARMONY…
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