MULTI-SPACE Spatial Omics Platform

The @ResearchLifesci provides #seedfunds for testing #innovative ideas that rely on or develop high-end technologies within #CoreFacilities and Platforms not available at the applicant's host institution. Apply by January 24, 2025. More info on: health-life-sciences.de/opportunities/…

🚨 Postdoc Opportunity! 🚨 Join the Laugsch Lab at @UniHeidelberg Institute of Human Genetics to explore Cornelia de Lange Syndrome with cutting-edge tools 🧪 70% Wet Lab | 💻30% Dry Lab 🔬 CRISPR, HiChIP-seq, RNA-seq, ATAC-seq 🔗klinikum.uni-heidelberg.de/humangenetik/f…

Last seminar of the year for single-cell enthusiasts! 📅 Tuesday 17/12, 14:00 CET 📍 BioQuant, INF 267, SR41 Join @FlorianIngelfi1 to explore groundbreaking tools for tracing tissues at the single-cell level in space and time. Host: @JulioSaezRod Supported by @MSpaceAlliance.

@natgabrielli @Visiopharm @embl @uniklinik_hd @DKFZ @UniHeidelberg @unimedizinma @ResearchLifesci Still time to register Dec 16, 2024 11:00 AM CET Register in advance for this meeting: eu02web.zoom-x.de/meeting/regist… After registering, you will receive a confirmation email containing information about joining the meeting.

🚨 Webinar Tomorrow! Streamline #MultiplexImage analysis with #Oncotopix by @Visiopharm 📷 Dec 16, 2024 | 11:00 AM CET 📷eu02web.zoom.us/meeting/regist… @embl @uniklinik_hd @DKFZ @UniHeidelberg @unimedizinma Supported by @MSpaceAlliance @ResearchLifesci #AI #Pathology #CODEX #ISS

🚨 Webinar Tomorrow! Streamline #MultiplexImage analysis with #Oncotopix. 🗓️ Dec 16, 2024 | 11:00 AM CET 👉 Register here: eu02web.zoom.us/meeting/regist… For @EMBL, @uniklinik_hd, @DKFZ, @UniHeidelberg. Supported by @MSpaceAlliance #CODEX #ISS #seqScope and more

🔬 Discover #Oncotopix, the AI-driven platform for precision pathology by #Visiopharm. Join us Dec 16, 2024, at 11:00 AM CET with Dr. David Mason. 📢 No bioinformatics skills required! 👉 Register here: eu02web.zoom.us/meeting/regist…

Single-cell and Spatial Metabolomics Online Day is Live youtube.com/live/9uM0ltTiJ… via @YouTube See you there!

🔊 Looking for a Postdoc in Digital Pathology? 🩺🧬🧫💻⚕️📊 ✨ Don't miss the chance to join this outstanding team led by @DenisSchapiro! 🔗karriere.klinikum.uni-heidelberg.de/index.php?ac=j… #SpatialOmics, #SpatialProteomics, #DigitalPathology

Exciting Event @embl Heidelberg! 🎉 Don't miss this exceptional opportunity to hear from renowned experts: 🌟 Detlev Arendt 🌟 Ashok Kumar Jayavelu 🌟 MichaelEibl 🌟 Jovan Tanevski 🌟 Elena Buglakova 🌟 James Lucas Cairns Gain insights in #singlecell and #spatialomics.

📢 Workshop Alert Interested in single-cell perturbation methods? Don’t miss the Statistical Methods for Post-Genomic Data workshop! 📊✨ 📍 Heidelberg 📅 January 23–24, 2025 🔗Register smpgd2025.sciencesconf.org by December 20, 2024 Organized by @CarlMHerrmann & @OliverStegle

📢 Join us for the 26th Single Cell Center Heidelberg Workshop! 📍 EMBL, Large Operon 📅 Thursday, December 5, 2024 🌟 Register: indico.dkfz.de/event/871/ Organized by @KarstenRippe, @JosephineBageritz, @CharlesGirardot, @natgabrielli, @Eileen_Furlong Supported by @ResearchLifesci

We are thrilled to share that our first paper from my new lab, Spateo (github.com/aristoteleo/sp…) for spatiotemporal modeling of molecular holograms, is now online in Cell: cell.com/cell/fulltext/…. Spateo is a comprehensive analytical framework for 3D whole-embryo spatiotemporal modeling. Its advanced features include: • 3D alignment and reconstruction at the whole-mouse-embryo scale (see the animation). • 3D spatial domain digitization and cell-cell communication analysis to understand spatial gene expression gradients and both inter- and intracellular communication. • 3D morphometric and volumetric analyses along with 3D morphogenesis vector field modeling to quantify dynamics such as surface area, volume, and cell density across organs, and to dissect the interplay between morphogenesis factors and cell migration. • A “Google Earth”-like browser, Spateo-viewer (viewer.spateo.aristoteleo.com and github.com/aristoteleo/sp…), for interactive and intuitive exploration of 3D spatial data. • Additional features, such as RNA signal-based single-cell segmentation. We are also honored that Nature “News and Views” has highlighted this work as well: nature.com/articles/d4158…. This is really an amazing outcome after two years' heroic revision process that rewrite the entire paper using a new data (doi.org/10.1101/2024.0…) for whole mouse embryos.