Mathieu J Almeida

1/9 🚨 New preprint alert! Frustrated by strange results with your metagenomic data? Meet CroCoDeEL, an accurate, easy-to-use tool to detect and quantify cross-sample contamination—no need for negative controls or sample positions! 🔗 doi.org/10.1101/2025.0…

GOAL! 3-0 Cristiano Ronaldo scored an absolute amazing goal. His second goal of the night. 🐐 twitter.com/nfcm23/status/…

📢Workshop exceptionnel à Paris le 13.11.2023! Une occasion unique de plonger dans le monde fascinant de l'#IA et du #microbiote intestinal ! En présence @h_sokol, @ClementLab, S Robin, M Berland et N Sokolovska. Inscription : scai.sorbonne-universite.fr/public/events/… 👇👇

Great work Pauline! In MIASSM, we pay special attention to metadata curation and in particular to reporting of contaminated and inverted samples that may bias your analyses.

Are you annoyed by strange results in your metagenomics data? Your dataset may contains well2well contaminations. Our poster B162 explains how to detect this critical issue using CroCoDDeeL, a tool designed by my student Lindsay Goulet. We will not bite you 🐊. #ISMBECCB2023

📢𝐍𝐞𝐰 𝐩𝐚𝐩𝐞𝐫: 𝐮𝐬𝐞 𝐨𝐟 𝐟𝐞𝐫𝐦𝐞𝐧𝐭𝐞𝐫𝐬 𝐜𝐨𝐮𝐩𝐥𝐞𝐝 𝐰𝐢𝐭𝐡 𝐦𝐞𝐭𝐚𝐠𝐞𝐧𝐨𝐦𝐢𝐜𝐬 𝐟𝐨𝐫 𝐭𝐡𝐞 𝐬𝐭𝐮𝐝𝐲 𝐨𝐟 𝐨𝐫𝐚𝐥 𝐢𝐧𝐯𝐚𝐬𝐢𝐨𝐧 𝐨𝐧 𝐭𝐡𝐞 𝐠𝐮𝐭 𝐦𝐢𝐜𝐫𝐨𝐛𝐢𝐨𝐭𝐚 journals.asm.org/doi/10.1128/sp… @MgpsLab @MathieuJAlmeida @INRAE_France Victoria Meslier

💧 État des nappes d’eau souterraine au 1er avril 2023 Que retenir ? 🔸le mois de mars a permis une légère recharge, notamment dans l’ouest, 🔸les niveaux restent sous les normales pour 75% des nappes, 🔸le bulletin fait peau neuve pour mieux appréhender l’emprise des nappes

🙌Journée #Microbiote sur le stand @INRAE_France 🙋🏻‍♀️ Une question #aliments fermentés et Microbiote à @dorejoel, Directeur de Recherche chez @INRAE_France et Directeur Scientifique de @MgpsLab. 🎥 La réponse en image 👇

Nice work from our team. Behind the scenes by Victoria Meslier (1st author of the paper) here : researchdata.springernature.com/posts/a-new-da…

In vitro modelling of oral microbial invasion in the human colon biorxiv.org/cgi/content/sh… #biorxiv_micrbio

👋Bienvenue sur le compte Twitter du projet Le French Gut ! Retrouvez sur ce compte toutes les actualités du projet : les événements, les articles, les publications, le consortium... Faisons avancer la science du microbiote ! #lefrenchgut #microbiote @INRAE_France

The image taken by the JWST compared to one taken by Hubble, of the galaxy cluster SMACS 0723. It's s a gravitational lens, showing us the light of galaxies that are far behind the cluster in arcs around it. I tried to orient them the same. LOOK AT THE DIFFERENCE.

I had to make a before and after to really appreciate how good the James Webb Telescope really is.

Bienvenue ! @veiga_pat a rejoint @INRAE_MICALIS & @MgpsLab en tant que Directeur de Recherche. A @MgpsLab, il renforcera le volet alimentation & reprendra la responsabilité scientifique de la plateforme SAMBO (collecte, extraction, biobanking). @INRAE_IDF @INRAE_DPT_MICA

Recovery of Metagenome-Assembled Genomes from a Human Fecal Sample with Pacific Biosciences High-Fidelity Sequencing | @ASMicrobiology Microbiology Resource Announcements journals.asm.org/doi/10.1128/mr… | @MgpsLab @HugoRoume @MathieuJAlmeida

In @ASMicrobiology MRA, we report the draft genome of POC01, a bacterium isolated from feces of a healthy donor. POC01 represents a previously uncultured species of the Oscillospiraceae family. Great collaboration between @MgpsLab and @BIOASTER ! doi.org/10.1128/mra.01…

Successful first Kick-off Meeting of our new FeMAI project about Federated medical #AI on gut #microbiomes funded via the German #BMBF and the French #ANR! Great discussions thanks to our partners at @metabioinfo @mgpslab @Inra_france

#HighlyCited2021 Nos grands experts @dorejoel et @DuskoEhrlich font parti des chercheurs les plus cités en 2021 @ClarivateAG ! Bravo à eux et à tous nos scientifiques de @MgpsLab qui font avancer la science du #microbiote en France 🚀👍 @INRAE_France @INRAE_IDF @INRAE_DPT_MICA

Hello from the 3rd General Assembly meeting in Leuven. A lot of data has been presented today with promising #multiomics results to develop biomarkers to predict disease progression and response to treatment for patients suffering from #cirrhosis and #ACLF. @EASLnews @EuropeLiver

A must-read paper for those working with gene catalogs academic.oup.com/bioinformatics…