PATRICBRC

New paper by Sanad et al. says "WGS, using PATRIC software to detect the virulence genes, revealed that 18 isolates had very similar virulence factor profiles, such as sopAD2, fimYD, pagOD, sitA, iroB, pipABCD, and sspA." mdpi.com/1887994 #mdpipathogens via @Pathogens_MDPI

" Nine highest-confidence SNPs were within “specialty genes” (a PATRIC-defined category of essential genes, virulence factors, AMR-associated genes, and others) in the functionally annotated genome available on PATRIC." mdpi.com/1939806 #mdpipathogens via @Pathogens_MDPI

New paper by Gupta et al. used data from PATRIC/BV-BRc in their analysis. pubmed.ncbi.nlm.nih.gov/36443666/

"The bacterial training dataset was obtained by identifying 25 Mycobacterium genomes in the PATRIC dataset (designated as being either ‘representative’ or from RefSeq) that are prophage free, as determined using PHASTER and careful manual inspection." academic.oup.com/nar/article-ab…

New paper by Zhang et al. says "...we performed a study based on screening and analyzing ST11 CRKP genomic data sourced from the Pathosystems Resource Integration Center (PATRIC) database between 2011 to 2020." mdpi.com/1823384 #mdpigenes via @Genes_MDPI

Recent paper by Benzerara et al. sayd "The search of homologous genes shared by C. fritschii PCC 6912 and PCC 9212 genomes was achieved based on unidirectional BLASTp best hits as implemented in the PATRIC proteome comparison tool." academic.oup.com/gbe/article/14…

Recent paper by Czmil et al. says "Another tool we tested was Patric. This platform provides bioinformatics analyses of all bacteria, with special focus on pathogens. It supports hybrid genome assembly in the formula of short + long reads." peerj.com/articles/13056/ via @PeerJLife

Recent paper by Luo et al. mentions the data availble in PATRIC, now known as BV-BRC. frontiersin.org/articles/10.33…

Recent paper by Guard says "The PathoSystems Resource Integration Center (PATRIC) is a genomics-centric relational database and bioinformatics resource designed to assist scientists in infectious disease research." mdpi.com/1631636 #mdpipathogens via @Pathogens_MDPI

Recent paper by Igbinosa et al. used PATRIC's Annotation Service in their analysis. journals.asm.org/doi/10.1128/MR…

Recent paper by Tehan et. al used the FastOrtho script in their analysis, which was developed by the PATRIC team. pubs.acs.org/doi/10.1021/ac…

Recent paper by Moynihan et al. used PATRIC's Proteome Comparison service to analyze their data. Great figure of this data! pubs.acs.org/doi/10.1021/ac…

Recent paper by Arrieta-Ortiz et al. says "Genes can be explored in the context of genome annotations, expression profiles, regulatory and metabolic membership, and other functional genomic information across databases including COG, Uniprot, and PATRIC." cell.com/cell-host-micr…

New paper by Usyk et al. assembled and annotated their genomes in PATRIC, now known as BV-BRC. ncbi.nlm.nih.gov/pmc/articles/P…

Recent paper by O'Neill et al. says "The S. felis C4 genome was annotated using the RAST tool kit via the Pathosystems Resource Integration Center (PATRIC) database." doi.org/10.7554/eLife.…

Using Genome Sequence Data to Predict SARS-CoV-2 Detection Cycle Threshold Values medrxiv.org/content/10.110…

Recent paper by Kang et al. says "To identify T3SS effectors (T3SEs), we used the predicted genes for each of the six strains from Patric 3.6 as queries for BLAST searches..." mdpi.com/1294800 #mdpimicroorganisms via @Micro_MDPI

Recent paper by Hutchins et al. says "To identify the lineage of QI0054 and QI0055, we retrieved 260 high-quality genomes covering the five major L. monocytogenes lineages from the Patric database." ncbi.nlm.nih.gov/pmc/articles/P…

Recent paper by Her et al. says "To identify gene clusters associated with resistance, we compared presence/absence patterns of the gene clusters against resistant phenotype annotations (provided by and downloaded from PATRIC database)." ncbi.nlm.nih.gov/pmc/articles/P…

Recent paper by Shrestha et al. describe the taxonomic classification of their data in PATRIC, now known as BV-BRC. ncbi.nlm.nih.gov/pmc/articles/P…