Reindert Nijland

📣Excited to share that our new #paper is out! Using #eDNA #metabarcoding to detect #elasmobranchs in #OWFs in the North Sea🦈🦈 sciencedirect.com/science/articl… @ReindertN @nanopore

These are juvenile small-spotted catshark (Scyliorhinus canicula) hatched in August this year. So cool! Btw, I am moving my posts to bluesky, follow me there at: bsky.app/profile/reinde…

Today I got some new guests in my home aquarium! #babyshark #doo_doo_doo

Mechazilla has caught the Super Heavy booster!

Direct native RNA (no cDNA!) sequencing from @nanopore is revolutionising RNA sequencing. It already achieves 19.4 Q accuracy and can detect modifications like m6a, m5c, pseudouridine and inosine. Watch my colleague Bronya Boydon explain how it works. youtube.com/watch?v=9qiClB…

This is worth a new thread. Not quite 24 hours. 50 Gb of data with an N50 of 115kb from a single load on a flow cell. This compares with 33.4 Gb in the same time from a standard flow cell with the same library and 2 loads. These beta flow cells need to stop being beta @nanopore

Phone screenshots are the worst. But can you tell which flow cell is the improved buffer? One needs flushing, the other is still going strong. I hope @nanopore can get these out of beta asap!

Over 5 minuten begint de première van De Wilde Noordzee. Lokatie: Caprera openluchttheater in Bloemendaal. Volgende week te zien in heel het land.

Preprint on "BWT construction and search at the terabase scale". We can compress 100 human genomes to 11GB in 21 hours, find SMEMs with it, do affine-gap alignment and retrieve similar local haplotypes. 7.3Tb commonly sequenced bacterial genomes ⇒ 30GB arxiv.org/abs/2409.00613

Eerste duik expeditie Waddenzee @ddnzs op het wrak van de Vollrath Tham; bijna bigbag netten geborgen en een tiental loodjes ⁦@NOB_Duiken⁩ ⁦@duikeninbeeld⁩ ⁦@Duikenredactie⁩ ⁦@SportvisserijNL⁩ @WURmarine⁩

@isauhn @nanopore @Apple Not yet. But I wish it was already.

@ReindertN @nanopore @Apple The iPad Pro option is already available ?

Sequencing DNA on our shiny new @nanopore MinION Mk1D. Hooked up to a workstation with a RTX4080 GPU, live basecalling at SUP accuracy is easy. Can't wait to connect it to an @Apple Ipad Pro instead, and take it in the field and at sea! #realrealtime #mk1d

@rajkdevika @nanopore @Apple As you can see on the Mk1D website from ONT, it is not yet available for purchase. We are testing a device under a developer licence.

@nanopore @ReindertN @Apple We would like to have this now... but nobody is giving a quote

Dieet jonge poolkabeljauw gevarieerder dan gedacht - ⁦@WURmarine⁩ wur.nl/nl/onderzoek-r…

DNA metabarcoding reveals high diversity of fish and macrofaunal species in diets of little auks and other Arctic seabird species in Svalbard | Polar Biology; a ⁦@WURmarine⁩ paper link.springer.com/article/10.100…

Op punt van vertrek in #Stellendam haven voor duikexpeditie Bruine Bank #DDNZS links op foto OW robot @ReindertN van @WUR voor EDNA video/foto & geluid

Led by @harika_urel @Health_talents @TU_Muenchen, we @helmholtz_ai @uzh_vetsuisse @fz_juelich present first evidence that AI-based analysis of @nanopore signal data might enable viability-resolved metagenomics – completely for free! biorxiv.org/content/10.110…; a quick thread (0/3):

Thread of photographers who patiently waited to capture the shot of a lifetime 🧵 1. Leonardo Sens (3 years)

Last day of @nanopore London Calling for us! But not before trying more yummy snacks🍦 @NanoporeConf #nanoporeconf

Q30 simplex achieved internally by ONT. 🤯 @The__Taybor @nanopore #nanoporeconf