Sam Sihvonen

🏥Akershus University Hospital modernised its genomic surveillance workflow with Solu🏥 Faced with a vancomycin-resistant E. faecium outbreak, the team replaced time-consuming command-line tools with real-time analysis. Turnaround time dropped. Insight quality improved.

Boom! Improved phylogenetic tree visualizations in the Solu Platform! 🌲 Radial format, collapsible branches, and better text readability. Easier and faster access to preventing epidemics with genomics. Link to trial below

Solu just added a little (AI) magic to your genomic epidemiology work. 🧙

Itse lähden siitä, että jos kukaan ei koskaan kritisoi, ei oikeasti ole saavuttanut mitään

Saatiin näköjään ylennys nuorista lupauksista neroiksi! Kiitos! hs.fi/mielipide/art-…

New case study: Ultrafast outbreak detection with Solu & Nanopore sequencing 🚀 Scientists from from Awanui Labs Wellington and ESR developed a breakthrough outbreak detection model using Solu and Nanopore sequencing. Link in reply!

New in our latest beta release: Instantly look up what the literature says about any gene or mutation, right inside Solu!

@jlsteenwyk @TimoJMoilanen Thank you @jlsteenwyk!!!

In summary, the Solu platform facilitates informative surveillance of microbial pathogens by removing the computational complexity. Congrats to the project leader @TimoJMoilanen & coauthors Visuri, Lehtinen, Ortega-Sanz, and Shivonen!🥳🥳 Grateful to have been part of the team!

NEW Publication🥳 Solu enables easy genome-scale pathogen surveillance! Solu is a real-time #pathogen surveillance platform. It automatically assembles, characterizes & compares WGS data—no bioinformatics expertise is required. 🔗: tinyurl.com/y8p24uya

We now automatically concatenate reads belonging to the same sample – simply upload your files and let the platform do the work.

Excited to share BakRep - our latest work published in @MicrobioSoc #MGen >661,000 bacterial genomes, uniformly characterized & annotated, enriched with metadata, accessible via a flexible search engine doi.org/10.1099/mgen.0… 👇 1/7

Candida app is expanding! We now offer AFR annotation for C. albicans, powered by #ChroQueTas & #FungAMR. Thanks @narmquijada & co for the amazing tool!

The newest #FungAMR & #ChroQueTas version for Candida albicans antifungal resistance mutations is now live in both Solu Platform and candida.app!

New: Compare your sample to 2 million public genomes! ⚡️ When you upload a new sample to Solu Platform, we automatically compare it to all public pathogen genomes and show the closest matches. Try it: platform.solugenomics.com

It’s now live! Built on the wonderful AllTheBacteria database by @shenwei356, @johnlees6, @ZaminIqbal & co!

What an @IDWeekmtg! Our socks were a hit, we ran out in the first few hours! Fantastic meeting up with our customers from @CedarsSinai

Really excited about the recent FungAMR/ChroQueTas preprint by @CamilleBed17, @narmquijada & co! We've now added it to our platform for C. albicans, making Solu the only web UI for ChroQueTas. Looking forward to expanding to other species!

We’ve heard your requests! A way to compare your samples to thousands, or even millions of NCBI samples on the Solu Platform! solugenomics.com/platform

A cool upcoming feature: When you upload a sample to Solu Platform, we’ll search all public NCBI samples for related genomes. This is built on the awesome AllTheBacteria database by Martin Hunt, Leandro Lima, @shenwei356, @johnlees6 & @ZaminIqbal

@CamilleBed17 Fantastic!

I'm delighted to share this highly collaborative work! We have curated over 400 papers to create FungAMR: a reference dataset of AMR mutations in fungi. We have used this new resource to better understand the mechanisms of resistance between fungal species and antifungal drugs.