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Happy to receive the doctorate with designation 'cum laude' from @WUR under the great mentorship of @dolfweijers. Thank you Dolf and everyone else for your support. Open access to my thesis: doi.org/10.18174/511001
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Sumanth Mutte
107 posts
Sumanth Mutte
@SumanthMutte
Bioinformatician | Founder of MyGen Informatics
Wageningen, Netherlands Katılım Mart 2018
142 Takip Edilen157 Takipçiler
Sumanth Mutte retweetledi
Out now in @MolecularCell: Cyanobacterial Argonautes and Cas4 family nucleases cooperate to interfere with invading DNA
cell.com/molecular-cell…
Most long-A pAgos interfere with invading DNA solo. Why then are cyanobacterial pAgos co-encoded with a Cas4-like protein?
A 🧵
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Sumanth Mutte retweetledi
A pangenome reference of wild and cultivated rice @Nature
nature.com/articles/s4158…
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@DCSwarts @BarendsePatrick @pilar_bobadilla Indeed, a small curious question to check for a couple of proteins became a big multi layered project
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Congrats to @SumanthMutte @BarendsePatrick and @pilar_bobadilla - it is amazing how a "simple" question can turn into an entirely new project with exciting insights!
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🔥New paper! 🔥
Distribution of bacterial DNA repair proteins and their co-occurrence with immune systems (cell.com/cell-reports/f…)
It started with a simple question: Are certain prokaryotic immune systems always (or never) encoded with specific DNA repair proteins?...
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Happy to have worked together with @BarendsePatrick @pilar_bobadilla and @DCSwarts great supervision... (One of) The last manuscripts from my tenure at @WUR and the first one from my company @MyGenInfo ...
Daan C. Swarts@DCSwarts
🔥New paper! 🔥 Distribution of bacterial DNA repair proteins and their co-occurrence with immune systems (cell.com/cell-reports/f…) It started with a simple question: Are certain prokaryotic immune systems always (or never) encoded with specific DNA repair proteins?...
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Sumanth Mutte retweetledi
Auxin and tryptophan trigger common responses in the streptophyte alga Penium margaritaceum biorxiv.org/cgi/content/sh… #biorxiv_plants
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Interesting and thoughtful!
owl@owl_posting
There aren't enough smart people in biology doing something boring owlposting.com/p/there-arent-… new argument piece i often meet a lot of founders in biology pursuing really crazy, revolutionary ideas. i love them! but i wish there were more people pursuing the boring ideas 🧵
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@BertDeRybel @DCSwarts @WUR Likewise, Bert. Great to support you with single-cell RNA-seq regulatory networks analysis from a plant evolution perspective.
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After almost a decade at @WUR Biochemistry, and invaluable support to our team, @SumanthMutte is moving on to new adventures.
Good luck with your company mygeninformatics.nl Sumanth! In need of bioinformatics support? Take a look - I highly recommend working with Sumanth!
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@dolfweijers @DCSwarts @WUR Thanks Dolf for being such a great mentor. Your support made me what I am today after spending a crucial part of my professional career at Biochemistry. Thanks for all the knowledge, guidance and inspiration!
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Sumanth Mutte retweetledi
It is my great pleasure to announce ggPlantmap (github.com/leonardojo/ggP…), an open-source R package to create ggplot maps from plant images. Now, you can create beautiful plant heatmaps to be visualized and modified in a R coding environment.
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Sumanth Mutte retweetledi
We are recruiting!📢 A postdoc position is available in our lab @WUR ! Please take a look at the details in the attached flyer! Pls repost!
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Sumanth Mutte retweetledi
itol.toolkit accelerates working with iTOL (Interactive Tree Of Life) by an automated generation of annotation files academic.oup.com/bioinformatics…
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Sumanth Mutte retweetledi
Just found out about the awesome @naturemethods' #PointsOfSignificance column on statistics for biologists that explains key statistical & experimental design concepts by @MKrzywinski & Naomi Altman
Check out all 50 articles #projecthome" target="_blank" rel="nofollow noopener">mkweb.bcgsc.ca/pointsofsignif…
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Sumanth Mutte retweetledi
Happy to share our new @bioRxiv pre-print: we provide a comprehensive profile of plant hormones in all streptophyte #algae lineages and some other as outgroups.
Find out more: biorxiv.org/content/10.110…
🧵[1/10]:
@PetrasekLab #phytohormones #evolution
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Sumanth Mutte retweetledi
Looking for #Bioinformatics courses on #GitHub? 🧐 You're in luck! 🍀@choup @P_Palagi and I from @ISBSIB have created #Glittr (glittr.org): a webapp that helps you find and compare awesome training materials. 🎉
How does it work? And how can you join us? Read on! 👇
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Sumanth Mutte retweetledi
And another chapter done! Learn about build automation using {targets}
If you’re interested in upping your data science game and build reproducible analytical pipelines, give my book a read, it’s free:
raps-with-r.dev
Comments more than welcome! #RStats #DataScience
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Sumanth Mutte retweetledi
It's been a while since this work started as the main project in Asier's PhD. Long story short is that DELLAs have not changed that much during evolution, which is impressive, but functional divergence was partly driven by their interactors and cis element evolution.
Nature Plants@NaturePlants
New Letter "DELLA functions evolved by rewiring of associated transcriptional networks" rdcu.be/c7vVN DELLA modulate dozens of TFs through direct physical interaction. This ability is conserved in land plants but with different biological effects in different lineages.
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Great work! Congratulations Karthi @murukarthickj and the whole team!
Murukarthick Jayakodi@murukarthickj
Marking a milestone in #plant #genomics!!! An amazing team of scientists around the globe unraveled the giant #fababean genome (~ 13 Gb), which is now out @Nature ..Huge congrats to all authors!!! #plantprotein @LeibnizIPK @LeibnizWGL nature.com/articles/s4158…
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