Ali Altıntaş
380 posts
Ali Altıntaş
@_AliAltintas_
Assistant Professor @Metabolcenter, University of Copenhagen 🇩🇰 | #Bioinformatician | #Molecular #Biologist | Forged in 🇹🇷
Copenhagen Katılım Mayıs 2012
750 Takip Edilen529 Takipçiler
The fruits of a fantastic collaboration is now out! 🎉
Luke McIlvenna@LukeMcIlvenna
Dissociation Between Metabolic Improvements and Mitochondrial Transcriptional Changes Following Exercise Training in Women with Polycystic Ovary Syndrome journals.physiology.org/doi/abs/10.115… @albut_ @_AliAltintas_
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Ali Altıntaş retweetledi
New name. New place. Same great training opportunities from Babraham Bioinformatics at The Babraham Institute @BabrahamUK - virtually around the UK and rest of the world.
Come and find us! biotrain.tv
and on Blue Sky, Facebook and LinkedIn!
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🚨 Deadline: Jan 11, Sunday
📢 Don’t miss your chance to join the PhD course “#Bioinformatics Analysis of #Gene #Expression Data from Bulk #RNAseq” at University of Copenhagen!
📅 26 Jan – 12 Feb 2026
👉 Apply here: phdcourses.ku.dk/DetailKursus.a…
Ali Altıntaş@_AliAltintas_
🔔 Excited to teach the PhD course “Bioinformatics Analysis of Gene Expression Data from Bulk RNA-seq” at University of Copenhagen! 📅 26 Jan – 12 Feb 2026 👍 Bring your own data (or use a public one) and learn the full RNA-seq pipeline: 👉 Apply: phdcourses.ku.dk/DetailKursus.a…
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Ali Altıntaş retweetledi
solid foundation in statistics is even more important in the age of AI.
This interactive app explaining statistic concepts is great
seeing-theory.brown.edu/index.html
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It is time to find out who "The Reviewer 2" is 😈
Oded Rechavi@OdedRechavi
😱OMG: "A subtle bug in OpenReview’s API briefly exposed one of the most sensitive parts of the research process, REVIEWER ANONYMITY. Researchers discovered they could query the identities of their reviewers" mgx.dev/blog/openrevie…
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You will learn:
✔ QC & alignment
✔ Differential expression
✔ Pathway enrichment
✔ Hands-on with Galaxy, UCloud & R
✅ Free for Danish PhD students
🧑🏫 Together with Stefan E. Seemann, Nadezhda T. Doncheva & Jan Gorodkin.
#Bioinformatics #RNAseq #PhDCourses #DataAnalysis
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🔔 Excited to teach the PhD course “Bioinformatics Analysis of Gene Expression Data from Bulk RNA-seq” at University of Copenhagen!
📅 26 Jan – 12 Feb 2026
👍 Bring your own data (or use a public one) and learn the full RNA-seq pipeline:
👉 Apply: phdcourses.ku.dk/DetailKursus.a…
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Ali Altıntaş retweetledi
🗨️ Just published in @NatureBiotech: Our CellWhisperer AI enables chat-based analysis of single-cell sequencing data. You can talk to your cells & figure out the biology without writing any computer code. Paper link and annotated walkthrough in the thread below (1/11)
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And finally, huge congrats, @bahti_yil! 👏 Thanks for the opportunity and for leading such an impressive piece of work. Proud to be part of this global effort with you! 🌍🧬
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🔍 Want to explore the data yourself? Check out the interactive resources:
🔗 yilmazlab.shinyapps.io/vivaria_app/
🔗 yilmazlab.shinyapps.io/vivaria_app2/
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🌍 Excited to be part of this global effort! 🦠
Microbial and metabolic diversity was mapped across 51 vivaria & 12 wild colonies, revealing striking functional convergence despite taxonomic divergence.
🔗 cell.com/cell-host-micr…
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Ali Altıntaş retweetledi
🚨 New paper out in Cell Host & Microbe!
We built the first global atlas of mouse microbiome diversity across 51 vivaria and 12 wild colonies 🌍🐭
cell.com/cell-host-micr…
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🚨 Dealing with sparse, noisy single-cell DNA methylation data (scBS-seq)? Check out #scDMV.
It uses a zero-one inflated beta mixture model to tackle the excess of 0s/1s and low coverage, boosting accuracy in identifying differentially methylated regions (DMRs).
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Ali Altıntaş retweetledi
Genotype-phenotype data from over 450,000 individuals was analysed to discover 205 genomic loci where an allele associated with increased adiposity was associated with a lower cardiometabolic disease risk to an individual nature.com/articles/s4159…
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On the art of great article titles: this one’s dedicated to all the Reviewer 2s out there.
🔗 onlinelibrary.wiley.com/doi/10.1111/ss…
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What a fantastic event! So great catching up with so many amazing colleagues ✨
Juleen R. Zierath@JuleenRZierath
The Zierath/Krook/Wallberg lab celebrated our current & former fellows and students at Nobel Forum sept 1 with a fantastic symposium on insulin action & metabolism. Grateful for all the trainees who traveled far & near to be with us to focus on science, inclusion, and innovation!
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❓ And what if your species is not present in this database? What do you do then?
❓ Isn't it enough to decide on an arbitrary cutoff (e.g. TPM < 1) for expression?
👉 Actually, you can do better than that. How? #BgeeCall #R package:
bioconductor.org/packages/relea…
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