Big Data Genomics

Cannoli version 1.0 released! Distributed execution of bioinformatics tools on Apache Spark. Requires Apache Spark version 3.2.1 or later. github.com/bigdatagenomic…

ADAM version 1.0 released! Scalable genomics analysis platform built on Apache Spark and Apache Parquet. Requires Apache Spark version 3.2.1 or later. github.com/bigdatagenomic…

Cannoli version 0.15.0 released! Distributed execution of bioinformatics tools on Apache Spark. Due to Apache Avro and Parquet upgrades, now requires Apache Spark version 3.2.0 or later. github.com/bigdatagenomic…

ADAM version 0.37.0 released! Scalable genomics analysis platform built on Apache Spark and Apache Parquet. Due to Apache Avro and Parquet upgrades, now requires Apache Spark version 3.2.0 or later. github.com/bigdatagenomic…

$ brew install brewsci/bio/adam ADAM version 0.35.0 is available in Homebrew and Linuxbrew via github.com/brewsci/homebr…

$ conda install adam ADAM version 0.35.0 is available on #Bioconda bioconda.github.io

$ pip install bdgenomics.adam ADAM version 0.35.0 is available on #PyPI pypi.org/project/bdgeno…

Cannoli version 0.13.0 released! Distributed execution of bioinformatics tools on Apache Spark. Align single end/paired end (.fq) and long reads (.fa) with minimap2 and unimap. github.com/bigdatagenomic…

ADAM version 0.35.0 released! Scalable genomics analysis platform built on Apache Spark and Apache Parquet. github.com/bigdatagenomic…

Cannoli version 0.12.0 released! Distributed execution of bioinformatics tools on Apache Spark. github.com/bigdatagenomic…

ADAM version 0.34.0 released! Scalable genomics analysis platform built on Apache Spark and Apache Parquet. github.com/bigdatagenomic…

Cannoli version 0.11.1 released! Distributed execution of bioinformatics tools on Apache Spark. Added support for bwa-mem2 aligner and made improvements to variant calling (e.g. freebayes). github.com/bigdatagenomic…

ADAM version 0.33.0 released! Scalable genomics analysis platform built on Apache Spark and Apache Parquet. github.com/bigdatagenomic…

Cannoli version 0.10.0 released! Distributed execution of bioinformatics tools on Apache Spark. Full support for the latest Apache Spark 3.0 release. github.com/bigdatagenomic…

ADAM version 0.32.0 released! Full support for the latest Apache Spark 3.0 release. github.com/bigdatagenomic…

Pipeline release! nf-core/viralrecon v1.0.0 (Assembly and intrahost/low-frequency variant calling for viral samples) See the changelog: github.com/nf-core/viralr…

Cannoli version 0.9.0 released! Distributed execution of bioinformatics tools on Apache Spark. Preparing for the upcoming Apache Spark 3.0 release. github.com/bigdatagenomic…

ADAM version 0.31.0 released! Preparing for the upcoming Apache Spark 3.0 release. github.com/bigdatagenomic…

Calling all researchers! At a time when sharing data analysis methods is vital, the @nf_core community would like to offer it's @nextflowio expertise and domain knowledge for the development of COVID-19 analysis pipelines.. ✅ Portability ✅ Reproducibility ✅ Scalability

$ conda install cannoli Cannoli version 0.6.0 is available on #Bioconda bioconda.github.io