Esa Pitkänen retweetledi
It's Fragment Friday! Happy to share our thoughts on #ctDNA #fragmentomics with @epitkane and @LeppaSM in the latest ctDNA issue of Seminars in Hematology: sciencedirect.com/science/articl…
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Esa Pitkänen
261 posts
Esa Pitkänen
@epitkane
Machine learning the cancer genome and other puzzles at @mlbiomed @FIMM_UH @ATGprogram @ican_finland
Helsinki, Finland Katılım Şubat 2009
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Wonderful to see our work on (deep) learning how to classify tumor types with WGS/WES data published in Genome Medicine! Great effort by @PrimaSanjaya and coauthors to validate the method in >10,000 whole cancer genomes. @FIMM_UH @ATGprogram @iCAN_Finland genomemedicine.biomedcentral.com/articles/10.11…
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@PrimaSanjaya @FIMM_UH @ATGprogram @iCAN_Finland An earlier thread on the key results: twitter.com/epitkane/statu…. For the revision, we validated MuAt in extended WGS cohorts together with @GenomicsEngland and @AaltonenLab - huge thanks!
Esa Pitkänen@epitkane
Excited to announce our new manuscript on tumor (sub)typing in NGS data! Wonderful work by @PrimaSanjaya in collab with @sebastianw @OliverStegle @JanKorbel5 @FIMM_UH @ATGprogram @mlbiomed biorxiv.org/content/10.110…
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Esa Pitkänen retweetledi
Are you our new Group Leader?
We will recruit early-stage group leaders in molecular medicine with notable international experience and ability to provide novel and complementary contributions to existing research at FIMM, @HiLIFE_helsinki & @helsinkiuni.
helsinki.fi/en/hilife-hels…
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Fantastic work from our collaborators @waaralab on this intriguing hematological disease.
Outi Kilpivaara@OKilpivaara
I’m overjoyed to share our collaborative work on ERCC6L2 disease. @BloodJournal @ASH_hematology. A must read for all hematologists! @MarjaHak @ullawk @waaralab @ATGprogram @HelsinkiUniMed Check out also a stellar commentary by @marrowgenes ashpublications.org/blood/article-…
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Thread on our key results twitter.com/epitkane/statu…
Esa Pitkänen@epitkane
How to virtually label cells with imaging flow cytometry (IFC) and identify cell types? @TimonenVeera created DeepIFC to solve this problem. Great collaboration with Finnish Red Cross Blood Service @Veripalvelu @FIMM_UH @ATGprogram @helsinkiuni @mlbiomed biorxiv.org/content/10.110…
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Happy to see our paper on reconstructing fluorescent labels in imaging flow cytometry with deep learning published. Excellent work by @TimonenVeera and collaborators! @frcbsresearch @mlbiomed @FIMM_UH onlinelibrary.wiley.com/doi/abs/10.100…
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Some positive developments👇! Thank you @SigridJuselius for the generous support!
Sigrid Jusélius Stiftelse@SigridJuselius
Cancer researcher @SVanharanta is the new Sigrid Jusélius Professor in basic medicine. Congratulations to Sakari and @helsinkiuni! Read more: sigridjuselius.fi/en/news/cancer…
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Esa Pitkänen retweetledi
Would you like to develop your own research line, on the interface of network science, computational tool development, and cancer research?
Apply to a postdoctoral position in my group and be the next addition to our collaborative and diverse team!
jobbnorge.no/en/available-j…
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We have exciting opportunities in @iCAN_Finland for bioinformaticians and clinical data analysts to transform large-scale molecular profiling and health registry data into breakthroughs in precision cancer medicine! jobs.helsinki.fi/job/Bioinforma… jobs.helsinki.fi/job/Clinical-D…
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Extremely grateful for the Senior Clinical researcher grant from #sigridjuseliuksensäätiö !! Research towards better cancer diagnostics and treatment continues. @HelsinkiUniMed @HUS_fi
Sigrid Jusélius Stiftelse@SigridJuselius
Korkeintaan nelivuotiset Varttuneen tutkijan toimet sekä ulkomailla tehtävään tutkimukseen suunnatut Fellowship- ja Senior Fellowship -apurahat on myönnetty. Onnittelumme uusille apurahansaajille! sigridjuselius.fi/ajankohtaista/… #sigridjuseliuksensäätiö #apuraha #säätiötekoja
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I am happy to tell that I will start as a K. Albin Johansson Cancer Research Fellow next year 🍾
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I am beyond thrilled to announce to be one lf the recipients of an ✨#ERCStG ✨@ERC_research to fight #ovariancancer
erc.europa.eu/news-events/ne…
Thank you family, mentors, collaborators and @SystemTumor lab! Check our new pages farkkilab.org and apply to join our team!
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Esa Pitkänen retweetledi
The cool yeasts are tacking to progress against wind or analogously natural selection
Mol Syst Biol@MolSystBiol
10/2022 Issue ➡️ bit.ly/3znKHIO Cover (@TeamSciStories): @kiran_r_patil &colleagues @MRC_TU evolve a wine yeast strain for increased aroma secretion using a new algorithm for designing chemical environments for adaptive #evolution
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Esa Pitkänen retweetledi
Excited to share our method for predictive evolution of metabolic traits using mathematical models of metabolism! Imagine the possibilities. Thousand thanks to all wonderful Co-Authors!
embopress.org/doi/full/10.15…
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Esa Pitkänen retweetledi
csc.fi/en/-/first-fin…
Cancer research, histomics and multiomics well presented in the first Finnish LUMI supercomputer projects. Including our HistoEncoder! @epitkane @RannikkoAntti Congrats also ComPatAI @PekkaRuusuvuori @TolonenTeemu
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@RuxandraLambuta @TimonenVeera @Veripalvelu @FIMM_UH @ATGprogram @helsinkiuni @mlbiomed Thank you Ruxandra!
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@epitkane @TimonenVeera @Veripalvelu @FIMM_UH @ATGprogram @helsinkiuni @mlbiomed Looks smashing! Congratulations! 👏👏👏
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How to virtually label cells with imaging flow cytometry (IFC) and identify cell types? @TimonenVeera created DeepIFC to solve this problem. Great collaboration with Finnish Red Cross Blood Service @Veripalvelu @FIMM_UH @ATGprogram @helsinkiuni @mlbiomed biorxiv.org/content/10.110…
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