@Givanna90 @TomAsh_1 @doc_merlin Huh I did not know you could do this outside of a Rmd file. Nice find!
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Mark Read
153 posts
You learn something new everyday! @TomAsh_1 @doc_merlin
R Function A Day@rfunctionaday
Sometimes you just want to quickly convert the source code from R script (.R) into a report (can be a markdown, PDF, HTML). The {stitch} function family from {knitr} 📦 makes this conversion effortless! 🧶 rdrr.io/cran/knitr/man… #rstats #DataScience
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Mark Read retweetledi
Thrilled to announce that our TrackSOM preprint is out on BioRxiv: biorxiv.org/content/10.110…. Here we present TrackSOM, an algorithm which delineates cellular populations and tracks their development over a time- or disease-course of cytometry datasets. github.com/ghar1821/Track…
bioRxiv@biorxivpreprint
TrackSOM: mapping immune response dynamics through sequential clustering of time- and disease-course single-cell cytometry data biorxiv.org/cgi/content/sh… #bioRxiv
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Mark Read retweetledi
Thrilled to announce our 'TrackSOM' algorithm for #timeseries #clustering in #highdimensional #cytometry data is now online, lead by the incredible efforts of @Givanna90 & @mnread. Check out our preprint (@biorxivpreprint) & use in #COVID19 (@CellRepMed): immunedynamics.io/tracksom_prepr…
Givanna Putri@givanna90
Thrilled to announce that our TrackSOM preprint is out on BioRxiv: biorxiv.org/content/10.110…. Here we present TrackSOM, an algorithm which delineates cellular populations and tracks their development over a time- or disease-course of cytometry datasets. github.com/ghar1821/Track…
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Mark Read retweetledi
#AHMRN is hosting an exciting event in April! Join our distinguished guest speakers as they discuss "The Who, What and How of Microbiome Data".
>> Register here: …crobiome-research.us7.list-manage.com/track/click?u=…
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Very excited for our method for evaluating clustering algorithms using "wisdom of crowds" (Pareto fronts, 'crowds' of metrics) be published in Bioinformatics! Bonus funding, #FlowSOM is a fantastic algorithm. Well done team!
Sydney Cytometry@SydneyCytometry
A new framework for benchmarking #clustering tools in #SingleCell #Cytometry data has been accepted for publication in #Bioinformatics, led by Givanna Putri with Assoc. Prof. Irena Koprinska, @TomAsh_1, @nickjck, @mnread, and @sydneycytometry. doi.org/10.1093/bioinf…. A thread:
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Mark Read retweetledi
A new framework for benchmarking #clustering tools in #SingleCell #Cytometry data has been accepted for publication in #Bioinformatics, led by Givanna Putri with Assoc. Prof. Irena Koprinska, @TomAsh_1, @nickjck, @mnread, and @sydneycytometry. doi.org/10.1093/bioinf….
A thread:
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I am chuckling at this thread much more than expected.
Oded Rechavi@OdedRechavi
I hate it when casual reading of my fortune in the morning coffee leaves me confused
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Huge congrats to the team, and @TheCesareLab and @LammNoa for getting this out! It's been a pleasure to work with you!
The Cesare Lab@TheCesareLab
At long last! Published today in @NatureCellBio, our paper “Nuclear F-actin counteracts nuclear deformation and promotes fork repair during replication stress”. nature.com/articles/s4155… 1/
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@tnaderer @AtmosJennyF Nice sentiment, but it'll never happen for the same reason these stats exist in the first place.
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@AtmosJennyF Ooops, just saw the pick. That is an impressive drop! I hope you enjoy.
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@AtmosJennyF Great post. And I'm sorry you've hit this impressive milestone. What's the whisky?
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@Thomas_Jeffries Yep. I'm on my second cup already and have a coffee trip with a friend planned for 11. Enjoy!
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Nice strong espresso to kick off the day ... all marking finished ! ☕️
Sydney, New South Wales 🇦🇺 English
Pretty final print version of paper out! T cells swarm into tumors to attack them. doi.org/10.7554/eLife.… @eLife
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This fortune cookie I just ate is the only thing holding me together as I scramble (once again) to finish a fellowship proposal 🥠 #AcademicTwitter
Stockholm, Sweden 🇸🇪 English
@MBmicrobiome I look forward to seeing transmissions of you in space, Amy. Congrats!
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I've been asked to give a talk for the European Space Agency. Does this mean I can say my research has intergallactic (not just international) impact?! 🤔🚀
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@FeliceJacka It's like that Turnbull guy should be our prime minister or something.
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Integration, exploration, and analysis of high-dimensional single-cell cytometry data using Spectre biorxiv.org/cgi/content/sh… #biorxiv_immuno
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