The Nirmal Lab

🔬 Join our Harvard BWH lab! We’re hiring a Senior Research Tech with: - Strong wet lab skills 🧬 - Expertise in immunofluorescence imaging 🔬 - Bonus: scRNA-seq & CRISPR experience 🔍 Know someone or interested? Please send your CV to nirmallab@bwh.harvard.edu. Please share!!

Here is a series of tutorials using SCIMAP 🎉 Perfect for those venturing into spatial biology or working with CODEX, MxIF, CyCIF, mIHC, MIBI, IMC, and related data types 🧬. We hope, it contributes to your work! scimap.xyz/tutorials/md/s…

I highly recommend JOSS to anyone looking to publish software tools without any drama (compare to every other tool that doesn’t work)! The entire peer-review process was open, interactive, and a seamless experience, all via GitHub! 🚀💻 Highly recommend it! #OpenSource #JOSS

🧵 Excited to share our recent publication: SCIMAP: A Python Toolkit for Integrated Spatial Analysis of Multiplexed Imaging Data! 📊🧬 SCIMAP has been pivotal in our lab for analyzing multiplexed imaging spatial data, enabling several high-impact studies. joss.theoj.org/papers/10.2110…

A "poor man's version" of viewing 3D data generated by Alex Wong and Clarence Yapp 🔬🎥 Welcoming donations of Apple Vision Pro 😉👓

I am excited to share that I will be presenting at the Festival of Genomics & Biodata in Boston (June 12-13). Let's chat if any of you are around. #FOGBoston Event: hubs.la/Q02s3zTT0

🌟 Excited to learn that we have received the "Team Science" award from @MelanomaReAlli with @dliu_ccb, @rhaq1, and Dr. Steve Hodi! 🎉 Looking forward to some exciting work in the space of immuno-oncology. 🔬💡

🚀 We've just OPEN-SOURCED a series of tutorials (over 15) on multiplex image analysis 🎉 Perfect for those venturing into spatial biology or working with CODEX, MxIF, CyCIF, mIHC, MIBI, IMC, and related data types 🧬. We hope, it contributes to your work! scimap.xyz/tutorials/md/s…

Birthday celebrations 🎂🎂🎉

🌟 Excellent presentation by our lab member, Sara Filler, on our ongoing research into the precancerous stages of melanoma. 🔬🧬 #Melanoma #SpatialBiology

We're on the lookout for a passionate and innovative computational Postdoctoral Fellow to join our team! Please spread the word! 🔬 Cutting-edge projects 📷 Collaborative environment nirmallab.com/blog/jobs/post…

Exited to be the beautiful NCI campus to discuss and define pre-cancer! Looking forward to sharing our work on melanoma pre cancer.

Wondering how #spatial context matters in complex #biology? Register for this @FLGenomics webinar to hear researchers discuss how #spatial technologies can be used to uncover disease biology at scale. bit.ly/43B8in9 @ajitjohnson_n @NosedaMichela @Pinkcigarette2

Dr. Nirmal will be sharing about the tumor microenvironment evolution in early melanoma today.

Our work highlighted alongside a bunch of other amazing manuscripts in the special collections of high-caliber cancer research (Tumor Microenvironment l) that was recently published in AACR journals. Thank you @CD_AACR ! aacrjournals.org/collection/459…

This is amazing.

New! @CTSCB_HK Stem Cell Seminar Series by Dr. @ajitjohnson_n @harvardmed @nirmallab "The Spatial Landscape of Progression and Immunoediting in Primary Melanoma at Single-Cell Resolution" Date: Apr 18, 2023 (Tue) Time: 9 AM (HKT) Format: Zoom JOIN us: bit.ly/3A6tvI9

@babyrin @ajitjohnson_n Thank you.

@nirmallab @ajitjohnson_n Wow

Do you see a 🦖?? Multiplexed imaging data of Breast Cancer! #htan #spatialbiology

We are looking for a Research Assistant to work on cutting-edge spatial omics data & tumor microenvironment. Join our collaborative & inclusive team. Apply Now: nirmallab.com/blog/jobs/rese… #spatialbiology #singlecell