Simon Heumos

I just found the sleeping bag in the actual backpack. Don't know how that happened. Anyhow, case solved, sorry for bothering!

I tried using your online service, but got this message: "Sorry, this service is temporarily unavailable. Please try again in 24 hours." I’m happy to provide my baggage claim number via PM or email. Please assist!

@AirFrance I just flew from SJO → BOG (AV699) → CDG (AF435) → Stuttgart (AF1608). My backpack with my sleeping bag attached was in a flight cover, but only the backpack arrived. The sleeping bag is missing.

"Challenging" publication on @naturemethods, co-authored with @erikgarrison and made together with many friends: @simonheumos @flavia_villani @zhigui_bao @lorenzotattini and way others more!

@michael_l_heuer @RikeHanssen @LukasHeumos @AndresGuarahino @pjotrprins @erikgarrison @NahnsenSven (3/3) By parallelizing all-vs-all alignments across cluster nodes with the power of Nextflow, we show that large pangenome graphs can be constructed in 2-3x less time compared to the PanGenome Graph Builder (PGGB). 💪 Check out the full paper for more details!

(2/3) A huge thanks to our amazing team: @michael_l_heuer, @RikeHanssen, @LukasHeumos, @AndresGuarahino, Peter Heringer, Philipp Ehmele, @pjotrprins, @erikgarrison, and @NahnsenSven . 👏

(1/3)🚀 Excited to announce our new paper: doi.org/10.1093/bioinf… 🎉! In this work, we demonstrate the advantages of using nf-core best practices for pangenome graph construction.

Cluster-efficient pangenome graph construction with @nf_core pangenome academic.oup.com/bioinformatics…

Pangenome graph layout by Path-Guided Stochastic Gradient Descent academic.oup.com/bioinformatics… 🧬🖥️ github.com/pangenome/odgi

Pangenome graph layout by Path-Guided Stochastic Gradient Descent academic.oup.com/bioinformatics…

Hot times at our 3-day #RomePanG24 course in #Rome! 🌍Participants are deeply engaged in hands-on activities, learning to leverage #pangenomics! 🧬💻 #Pangenome #Assembly #PangenomeGraphs @erikgarrison @flavia_villani

Panacus: fast and exact pangenome growth and core size estimation biorxiv.org/content/10.110…

It’s only June and we already have 20 fantastic sessions confirmed for BGA24! These cover manual-curation, assembly pipelines, annotation, tools for manipulation and exploration and more! You can find out more at thebgacademy.org! #BGA #bioinformatics #EBP #genomics

Heading to #eshg2024 shortly - we have four post doctoral positions in computational genomics, graph genomes, blood single cell genomics, and statistics coming online soon - get in touch if you are interested in meeting up and discussing any of these

Want to talk about immunopeptidomics pipelines at #ASMS2024? Come visit @jns_schd at poster 582!

Graduate Research Day was full of great science! @UTHSC_CGHS @uthsc @UTHSCResearch

Excited to share a new preprint! We developed a new algorithm for POA, POASTA (pronounce it with your best Bo-ah-ston accent). It is based on the A* framework and inspired by other recent alignment algorithms such as the WFA and Astarix. biorxiv.org/content/10.110…

Wrapping up the #MemPanG24 course! Thanks to everyone who participated and made it such an enjoyable experience. #WeAreTheFrogs! #Memphis #pangenome #UTHSC

We are starting our MemPang24 course today, happy to have all of you! #MemPanG24 #pangenome @erikgarrison @AndresGuarahino @simonheumos @pjotrprins @v_colonna @robwilliamsiii @UTHSCResearch @UTHSC_CGHS

Cluster efficient pangenome graph construction with nf-core/pangenome biorxiv.org/content/10.110…