Simon Oxenford

This project kicked off hand in hand with my PhD some years ago and is now published as the PhD journey concludes. Excited for the future and what comes next! 🌟

🛠️ We've implemented a set of tools for interactively refining mismatches after image normalization. This enables data aggregation from various sources, allowing for more accurate representations of it.

🚀 Our WarpDrive toolbox has just been accepted for publication in Medical Image Analysis! Huge thanks to everyone involved, especially @sofiari91 and @andreashorn_ . 🙌 Available now on @leaddbs and @3DSlicerApp. Check it out here: doi.org/10.1016/j.medi…

Read an “@eLife digest” about our intraoperative multimodal mapping tool, Lead-OR, spearheaded by @simonoxen w/@c_neudorfer, @jan_roediger, @lukamneuro, @neumann_wj, @Chris_Guettler, @vajkoczy & @AA_Kuhn here: elifesciences.org/digests/72929/… Full paper: elifesciences.org/articles/72929

Excited that @simonoxen’s Lead-OR toolbox paper has been published w/ @eLife today. Much has happened till the preprint so here’s a renewed tweetorial about Lead-OR: elifesciences.org/articles/72929

@Bassam_Al_Fatly this morning at #dgkn2022 presenting his amazing work on lession and DBS network mapping for tics.

@NaN_Value presenting her exciting work as a top poster earlier today at the DBS Expert Summit! Check it out here -> #RajamaniSummit" target="_blank" rel="nofollow noopener">netstim.org/research-inter…

We’re looking for an RA and Postdoc to join our network neuromodulation (deep brain stimulation & connectomics) lab at @MassGenBrigham & @harvardmed as soon as possible! Please reach out via email or DM and please RT for reach! Thanks! RA post here: partners.taleo.net/careersection/…

@Kitware @NIH This is great! Is there a way to keep up to date with the development?

Kitware Chosen to Help Advance Brain Research Through a $1.3M NIHGrant via ow.ly/3Ewi50FU58S @NIH #brainresearch #neuroscience #ITK

@DembekTill @andreashorn_ Thanks Till, yes for now Leksell is implemented. But we can work on adding more

Lead-OR: A Multimodal Platform for Deep Brain Stimulation Surgery, now as a pre-print medrxiv.org/content/10.110… ! Thanks to all co-authors, specially @andreashorn_ for supervision. First first-author manuscript - exciting!

@garyfallidis @dipymri @slicer3d @3DSlicerApp

Just learned that Slicer3D (@slicer3d) users can install DIPY (@dipymri ) using slicer.util.pip_install("dipy"). 😍 More power to you!

@JoaoBiomed Nice! is there some resource I can look at in case I missed it?

Looking for a very high (100µm) resolution digital brain phantom with realistic structural detail and MR properties to help developing your #imaging methods? Check out our BigBrain-MR phantom at #ISMRM21! Cristina Sainz will be presenting today, software tools session, 16:00 CEST

@andreashorn_ @BigBrainProject @eduardo_alho @NaN_Value there's this from BigBrain ebrains.eu/service/voluba/ tutorial/demo: youtube.com/watch?v=l_7ILe… Uses BigBrain as reference. Didn't use it myself

Dear twitter hivemind: Any good software to register histological stacks to each other with manual interaction/interface? @BigBrainProject @eduardo_alho @NaN_Value Tried histolozee but seems buggy and not maintained anymore. Thanks for RT or comment!