Busch Lab
76 posts
Busch Lab
@busch_lab
We're interested in the relationship between gene activity and phenotypic outcomes after challenges like genetic mutations, chromatin disruption and infection.
Cambridge, England Присоединился Haziran 2019
141 Подписки135 Подписчики
Someone on Mastodon recently posted about issues they've seen with #zebrafish annotation in recent #Ensembl versions, so we wrote down some of what we've noticed.
The TL;DR version is that we are just using Ensembl 109's annotation, including for enrichment analyses.
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Busch Lab ретвитнул
Today is a very exciting day to see this paper finally published in @NatureGenet 💫
Congratulations to Ana Topf and Volker Straub for the hard work and the resilience 👩🔬 🔬 👨🔬
@jwmdrc @UniofNewcastle @anatopf
Enjoy the reading nature.com/articles/s4158…
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Busch Lab ретвитнул
It was such a pleasure to give an interview for the First Person series @DMM_Journal!
This is a great space for researchers to highlight their science and plans for the future.
doi.org/10.1242/dmm.05…
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Busch Lab ретвитнул
The final version of our new article is out @DMM_Journal! We analysed the transcriptome of Shigella flexneri infection in zebrafish larvae and discovered Shigella-inducible factors involved in controlling host susceptibility.
doi.org/10.1242/dmm.05…
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Busch Lab ретвитнул
New article out! We analysed the transcriptional signature of Shigella flexneri infection in zebrafish larvae and discovered Shigella-inducible factors involved in controlling host susceptibility.
Thanks to all the co-authors!
doi.org/10.1242/dmm.05…
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Busch Lab ретвитнул
Wave if you've enjoyed your week of #bioinformatics training 👋!
Thank you to the participants, trainers, and organisers at 'Introduction to RNA-seq and functional interpretation'. We look forward to seeing what you do next.
Discover more training: ebi.ac.uk/training/
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Busch Lab ретвитнул
Transcriptional profiling of zebrafish identifies host factors controlling susceptibility to Shigella flexneri biorxiv.org/cgi/content/sh… #bioRxiv
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Busch Lab ретвитнул
👋 Thank you to all the trainers, organisers, and delegates for joining us for our last on-site course of the year! @e_m_busch, @mirloupa, @aleenamolbio, @Antonia_Nilsson, @iansealy, @richysix, @canicamxli, and many more.
➡️Join us at an event in 2023: ebi.ac.uk/training/live-…
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Busch Lab ретвитнул
Do you have a cool idea for a genetic screen in #zebrafish or are you interested in robustness during development? Get in touch to discuss this #postdoc fellowship call rea.ec.europa.eu/funding-and-gr… @QMUL @QM_SBBS
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If you were thinking of registering but haven't had time then we have good news - you've now got until next Friday. Come and join us as we return to the lovely Wellcome Genome Campus for four days of zebrafish bioinformatics and functional genomics.
EMBL-EBI Training@EBItraining
For one week only, we've extended the deadline for our #zebrafish course due to popular demand! 🗣️ @busch_lab, @e_m_busch, @BENsembl, @ensembl, @canicamxli, @news4go, @reactome, @ExpressionAtlas 🔗Apply by 8 July: ebi.ac.uk/training/event…
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Busch Lab ретвитнул
For one week only, we've extended the deadline for our #zebrafish course due to popular demand!
🗣️ @busch_lab, @e_m_busch, @BENsembl, @ensembl, @canicamxli, @news4go, @reactome, @ExpressionAtlas
🔗Apply by 8 July: ebi.ac.uk/training/event…
EMBL-EBI Training@EBItraining
One week left to apply for our #bioinformatics and functional #genomics in #zebrafish course that will be held at @emblebi this September. 🦓🐟 🔗 Apply now: ebi.ac.uk/training/event…
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We couldn't be at #IZFC2022 this year, but hope to meet some #zebrafish researchers @emblebi in September. There's a week left to apply.
EMBL-EBI Training@EBItraining
One week left to apply for our #bioinformatics and functional #genomics in #zebrafish course that will be held at @emblebi this September. 🦓🐟 🔗 Apply now: ebi.ac.uk/training/event…
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Busch Lab ретвитнул
Big thanks for the ongoing support from @stevewilsonfish and @The_MRC, and to all our collaborators @fishymusings @leovaldevo @ibianco3 @NeuhaussLab @CorinneHouart @realRihellab!
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Come and join us! Please spread the word.
EMBL-EBI Training@EBItraining
🦓🐟Applications are open! Learn how to design functional #genomics experiments, manage and analyse #RNAseq datasets from #zebrafish, and compare results to other species. 🗣️ @e_m_busch, @iansealy, @richysix, @canicamxli & more 🔗 Apply by 1 July: ebi.ac.uk/training/event…
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Please share this open PhD position in our lab: "Investigating the rules of paralogue interactions during embryonic development"
Elisabeth Busch@e_m_busch
We have an open PhD position, please share! Closing date 22nd March, do get in touch with any questions. qmul.ac.uk/sbbs/postgradu…
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Busch Lab ретвитнул
Super happy to have this story up @biorxivpreprint with @stevewilsonlab. Allele-specific expression can mess with your mutant #RNAseq, always check genomic location of DE genes! #zebrafish
bioRxiv@biorxivpreprint
A red herring in zebrafish genetics: allele-specific gene expression can underlie altered transcript abundance in zebrafish mutants biorxiv.org/cgi/content/sh… #bioRxiv
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Busch Lab ретвитнул
A red herring in zebrafish genetics: allele-specific gene expression can underlie altered transcript abundance in zebrafish mutants biorxiv.org/cgi/content/sh… #bioRxiv
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Busch Lab ретвитнул
Thanks NIDA for the opportunity to present to the 2021 GECCRT meeting! Look for #Leggieri #Mech #Hosseinian & #Merteroglu to access our works tinyurl.com/2021GECCRT
@Dan10R3r10 @aleksandra_mech @saEdehosseinian @busch_lab
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