CFDE Workbench

Our paper “The CFDE Workbench: Integrating Metadata and Processed Data from Common Fund Programs” is now published @JMolBiol 🎉 The CFDE Workbench info.cfde.cloud makes NIH Common Fund data FAIR and AI-ready to empower cross-program discovery 🔗 tinyurl.com/5ak2vrjp

The #CFDEWorkbench platform (info.cfde.cloud) now supports gene set #EnrichmentAnalysis 🥳 👏🌎🥁data.cfde.cloud/enrichment You can now query your gene sets against gene set libraries created from 8 @NIH_CommonFund programs. #CFDE @LINCSProgram @MaayanLab @gly_gen @_hubmap

The @CfdeWorkbench analysis platform #GeneSetCart genesetcart.cfde.cloud is now published at @GigaScience pubmed.ncbi.nlm.nih.gov/40208796/ Read more about it @NIH_CommonFund #CFDE website: commonfund.nih.gov/dataecosystem/… and how it was applied to study #AxD disease. #Bioinformatics #AI #genesets

It's day 1 of @FoGenomics come stop by booth 60B across from the Genome Dome to learn everything #CommonFundDataEcosystem! #FestivalofGenomics @CfdeNih @NIH_CommonFund @CfdeWorkbench

Join us on Thur. July 24 @ 2 PM ET for a virtual seminar about ChEA-KG, a newly developed @MaayanLab web-based app that enables users to analyze their gene sets in context of a human gene regulatory network (1559 transcription factors). Please register at maayanlab.cloud/turl/35e9d6a0

Unable to join today's #CommonFundDataEcosystem #PublicWebinarSeries with Dr. Allissa Dillman? The webinar recording is now live here: youtu.be/x1GQxeCdZEM @NIH_CommonFund @CfdeWorkbench

In two weeks we will host our next #CFDEPublicWebinarSeries! Join us from 1-2 PM ET to hear from Dr. Allissa Dillman from the CFDE Training Center. Learn more about the event here: cfdeknowledge.org/r/CFDE_webinars @NIH_CommonFund @CfdeWorkbench #CFDETrainingCenter

Learn how we combine the best knowledge graphs can offer with statistical analysis, LLMs & human curation for the @NIH_CommonFund CFDE KC. @ncats_nih_gov 👇

#dkNET presents a "Building Knowledge Graphs Towards Transparent Biomedical #AI " #webinar with Dr. Jie Liu - Join us today at 11 am PT! More info: dknet.org/about/blog/2821 #MachineLearning #DataScience #bioinformatics #diabetes #genomics

Podcast with Dr. Shankar Subramaniam about integrating and making @NIH_CommonFund data more accessible. Highlighting @CFDEWorkbench cdfe.info, a robust info and data portal for researchers to access and analyze omics datasets effectively tinyurl.com/yka7jjpc.

Read this great article about @AviMaayan, alumnus of @FDUWhatsNew fdu.edu/fdumagazine/fd… Dr. Ma'ayin is doing great things at @IcahnMountSinai!

The CFDE Workbench: Integrating Metadata and Processed Data from Common Fund Programs biorxiv.org/content/10.110… #biorxiv_bioinfo

We have so many incredible speakers that will be presenting at our workshop on Friday! Join us to hear cutting edge scientific research from 10 AM - 2 PM ET. Registration is open here: tinyurl.com/mpmnmvrh @CfdeWorkbench @motrpac @TerraBioApp

Join us on February 28th for our next installment of the #CFDEPublicWebinarSeries featuring @4DNucleome's Peter Park presenting "4D Nucleome Turns 10: Mapping the Dynamic Architecture of the Genome." Register for the event here: broadinstitute.zoom.us/webinar/regist… @CfdeWorkbench @CfdeNih

· Interested in applying to the #ComplementARIE #NewApproachMethodologies Data Hub and Coordinating Center #FundingOpp? Join the #InformationalWebinar on 2/13/25 at 11am ET! bit.ly/NDHCC_Webinar

Just a few days left to register for the #NuclearArchitecture Meeting hosted by #4DNucleome! Join us in San Diego, CA on December 11-13, 2024. The deadline to register is Monday, December 2nd. Register today! bit.ly/3X9gha0

#NutritionforPrecisionHealth is advancing precision #nutrition and was featured on @CBSSunday! The study is led by a coalition of NIH partners, including #NIHCommonFund, the Office of Nutrition Research, and @AllofUsResearch. Enrollment is open! Watch here allof-us.org/3UY1zkm

Do you develop and market scientific tools? Join us tomorrow, November 22nd from 1-2 PM ET to learn various strategies from #COMPA and @MetaCell during our #CFDEPublicWebinarSeries. Register here: broadinstitute.zoom.us/webinar/regist… @CfdeWorkbench @NIH_CommonFund

The @CfdeWorkbench team will showcase the #CFDE information portal (cfde.info), the #CFDE data portal (data.cfde.cloud), and #GeneSetCart (genesetcart.cfde.cloud) at #ASHG2024 #ASHG24. To learn more about the #CFDE visit booth 571. @NIH_CommonFund @CFDEKC