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First blog post! Stan can be daunting for ecologists because discrete parameters are not allowed with Hamiltonian Monte Carlo (HMC), and many ecological models are constructed as hidden Markov models (HMMs) where the latent ecological states of interest are discrete. (1/3)
Quantecol@realQuantecol
🚨 We launched a blog! In our first post, we explore how ecological models can be formulated as hidden Markov models and present a scalable formulation of the forward algorithm for increasingly complex models using Hamiltonian Monte Carlo in @mcmc_stan. quantecol.com.au/blog/hmm-in-st…
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