Jeremy Gygi

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Jeremy Gygi

Jeremy Gygi

@JeremyGygi

Senior ML Scientist @AbbVie 💻 PhD Comp. Biology @YaleCBB 2024 🧬 BS Bioinformatics @BYU 🦾 Fascinated by ML applied to multi-omics data

Cambridge, MA Sumali Mayıs 2020
106 Sinusundan104 Mga Tagasunod
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Cole Maguire
Cole Maguire@colemag9·
I’m excited to announce that our paper on viral molecular mimicry just came out! Molecular mimicry occurs when pathogens “mimic” host protein structure. Here, we explore mimicry across the human virome and its connection to autoimmunity. @MelamedEsther nature.com/articles/s4146…
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Leying (Lexi) Guan
Leying (Lexi) Guan@LeyingGuan·
Excited to share our latest #IMPACC study on patient subtype discovery using longitudinal multi-omics! We identified 5 subtypes among 1,000+ hospitalized #COVID19 patients, highlighting the link between distinct immune responses in those with similar respiratory status to various acute complications and #LongCOVID risk. biorxiv.org/content/10.110… This work is co-led by wonderful students Kexin, Yutong, @colemag9, collaborators @VirusesImmunity, @JoannDArce, Lauren, and the #IMPACC consortium team.
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bpeters
bpeters@bpeters·
We are excited to announce that the 3rd (Public) CMI-PB Challenge is officially underway! Test out your modeling skills to predict immune responses to B. pertussis #whoopingcough booster vaccination using multi-omics datasets for a chance to win. #bioinformatics #immunology (1/5)
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Dr. Anna Konstorum
Dr. Anna Konstorum@a_konstorum·
I'm thrilled to share our new #Bioconductor package, nipalsMCIA, which performs multi-omic dimensionality reduction using the NIPALS algorithm. It is fast (especially for large datasets), and user friendly. Give it a try! biorxiv.org/content/10.110… (1/4)
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Joann Arce, PhD
Joann Arce, PhD@JoannDArce·
Congratulations to our #IMPACC team members @LeyingGuan @JeremyGygi @colemag9 @sciRPatel for our newly published COVID-19 multiomics paper in JCI! Grateful to be working with all of you for the past few years!
Leying (Lexi) Guan@LeyingGuan

I am excited to share that our #IMPACC paper - Integrated longitudinal multi-omics study identifies immune programs associated with acute COVID-19 severity and mortality - was recently published in @jclinicalinvest. jci.org/articles/view/… #SystemsBiology #Bioinformatics [1/5]

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Hoang Van Phan
Hoang Van Phan@HoangVanPhan2·
Excited to share my latest research on #COVID19 and #aging, together with @ATsitsiklis and @colemag9, that just came out on @ScienceTM! x.com/czbiohub/statu…
Chan Zuckerberg Biohub Network@czbiohub

A new study led by #CZBiohubSF & @UCSF researchers provides fresh insights into why age is a major risk factor for severe #COVID. It is the most comprehensive analysis to date of how age affects the immune response to #SARSCoV2. 1/7 Read in @ScienceTM ⤵️ bit.ly/4aUR2Mc

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Jeremy Gygi
Jeremy Gygi@JeremyGygi·
If you are working with any type of “omics” data and have a desire to find predictive analytes for a response of interest, we offer SPEAR as a free publicly available R-package. Feel free to reach out with any questions you may have. biorxiv.org/content/10.110… Thank you! (13/13)
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Jeremy Gygi
Jeremy Gygi@JeremyGygi·
On both the TCGA and COVID-19 datasets, we demonstrate that SPEAR is able to construct biologically significant multi-omic factors, finding key pathways and insights that are backed by literature. (12/13)
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Tuklasin

@MelamedEsther @colemag9 @VirusesImmunity @JoannDArce @TsangLab @skleinstein @NatureMedicine @LeyingGuan