Tweet épinglé
📢We are recruiting!!
Spatial-Cell-ID is looking for a postdoctoral fellow or research engineer in image analysis applied to spatial transcriptomics.
Come join us in Lyon to analyze our beautiful MERFISH data!
shorturl.at/eijC0
English
Spatial-Cell-ID
38 posts
Spatial-Cell-ID
@Spatial_Cell_ID
The Spatial-Cell-ID EquipEx+ platform provides equipment and expertise for single-cell spatiotemporal transcriptomics (aka #spatialtranscriptomics)
Lyon, France Inscrit le Ocak 2022
98 Abonnements127 Abonnés
Spatial-Cell-ID retweeté
🚨Preprint alert!
tinyurl.com/2zkmynsd
Did you ever dream of generating spatial maps of #enhancer activity at #singlecell resolution in a multicellular organism using massively parallel enhancer-reporter assays?
Then spatial-scERA is the method for you!
English
English
Join us on June 12th for a workshop on scRNA-seq
Registration (limited to 50 people) is free but mandatory
spatial-cell-id.ens-lyon.fr/outreach-devel…
English
Looking for an internship in #SpatialOMICs #scOMICs? Look no further!
👇
Sergio Sarnataro@SarnataroSergio
At @Spatial_Cell_ID we are looking for a motivated M2 student for an internship in Bioinformatics. Find more information here: drive.google.com/file/d/1_jcPto… Contact me if you have any questions! #SpatialTranscriptomics #Job #WeAreHiring #SingleCell #bioinformatics #ENSLyon
English
@jeremygnfsk Bonjour,
il suffit de nous envoyer un mail à spatial-cell-id[arobase]ens-lyon.fr
Français
bonjour @Spatial_Cell_ID , comment on s'inscrit à la liste de diffusion s'il vous plaît? Je n'ai pas trouvé sur le site
Français
Spatial-Cell-ID retweeté
It's tomorrow!!
We're expecting a full room for an exciting day of science and spatialOMICs discussions 🤩
Spatial-Cell-ID@Spatial_Cell_ID
Join us in Lyon for the annual Spatial-Cell-ID day! We will welcome @DenisSchapiro (@UniHeidelberg) and Marco Grillo (@MatsNilssonLab @scilifelab) as keynote speakers. Full program available here: spatial-cell-id.ens-lyon.fr/outreach-devel…
English
Next week I will travel to Lyon for the Spatial-Cell-ID day. Follow @Spatial_Cell_ID to learn more about their national platform for #spatialomics
Spatial-Cell-ID@Spatial_Cell_ID
Join us in Lyon for the annual Spatial-Cell-ID day! We will welcome @DenisSchapiro (@UniHeidelberg) and Marco Grillo (@MatsNilssonLab @scilifelab) as keynote speakers. Full program available here: spatial-cell-id.ens-lyon.fr/outreach-devel…
English
Join us in Lyon for the annual Spatial-Cell-ID day!
We will welcome @DenisSchapiro (@UniHeidelberg) and Marco Grillo (@MatsNilssonLab @scilifelab) as keynote speakers.
Full program available here:
spatial-cell-id.ens-lyon.fr/outreach-devel…
English
Spatial-Cell-ID retweeté
🔔Proud and excited to share our latest preprint!
We asked this simple question: do TADs really act as strong boundaries or can functional enhancer-promoter interactions be established across TAD boundaries?
biorxiv.org/content/10.110…
A 🧵on our main conclusions: (1/n)
English
Do you love #imaging, #spatialOMICs, and tech development?
Come join the @Spatial_Cell_ID team @ENSdeLyon !
English
Spatial-Cell-ID retweeté
Using transcriptomic similarity and spatial coordinates, PASTE allows aligning and integrating spatial transcriptomics data generated from adjacent tissue slices. @RonZeira @benjraphael
nature.com/articles/s4159…
English
Spatial-Cell-ID retweeté
I’m so happy to present our spatial multi-omics work out today! nature.com/articles/s4146… #spatial #transcriptomics #citeseq #smomics
English
Spatial-Cell-ID retweeté
Spatial-CUT&Tag! @ScienceMagazine, unfolding a new chapter of #spatialomics 🤗 . From my phenomenal postdoc @DengYanxiang of @YaleSEAS
@YaleBME, @yalepathology @YaleMed @YaleCancer
Thanks to awesome collaborators @GoCasteloBranco @marekbartosovic @PKukanja science.org/doi/10.1126/sc…
English
Spatial-Cell-ID retweeté
It's great to see our article about the multimodal omics analysis framework muon out!
Many thanks to everyone who provided feedback along the way. 🙌
See a few highlights in the thread below.
Genome Biology@GenomeBiology
MUON, from @gtcaa, Kats & @OliverStegle, a package for organizing, analyzing, visualizing & exchanging multi-omics data. It is based around MuData, an open data structure for multimodal data. An example given is ATAC-seq and RNA-seq from single cells genomebiology.biomedcentral.com/articles/10.11…
English
Spatial-Cell-ID retweeté
New Resource online now at Dev Cell: A single-cell Arabidopsis root atlas reveals developmental trajectories in wild-type and cell identity mutants - zpr.io/6nU8Z95mJ8qS
English
Spatial-Cell-ID retweeté
"Spatial components of molecular tissue biology", review wrote with @davidsebfischer @fabian_theis and Aviv Regev is out in @NatureBiotech. We outline biological questions and computational challenges in spatial analysis of tissues. 1/N nature.com/articles/s4158…
English
Spatial-Cell-ID retweeté
How to efficiently analyse & process large-scale spatial transcriptomics data from different techs?
We've developed Spacemake that does this and much more
biorxiv.org/content/10.110…
English
Spatial-Cell-ID retweeté
Power analysis for spatial omics | bioRxiv biorxiv.org/content/10.110…
Dansk
Spatial-Cell-ID retweeté
Spatially resolved transcriptomics and its applications | Nice review from Prof. Mingyao Li's group @DrMingyaoLi Statistical and machine learning methods for spatially resolved transcriptomics with histology sciencedirect.com/science/articl…
English