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My (Raparia Jat) AT2 qpAdm static runs along with Hunter Gatherer breakdown and 4 AT1 rotations done by @sapphiregnm
I got WGS from @SequencingCom and sent the FASTQ files to @YseqDNA . They generated HG19 BAM for a fee and I used pileupCaller on that HG19 BAM with -q 30 -Q 30 quality filter to generate the EIGENSTRAT format file that @sapphiregnm merged with v66 2M AADR dataset.
Output from pileupCaller: 1.8 million + SNPs (multiple times higher than total RAW SNPs in NGS kits let alone after merging with AADR)
Output of each AT1 rotation along with qpfstats log and fstats is provided in pastebin links in description of each image.




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