Jason Yang

Copper Drives Remodeling of Metabolic State and Progression of ccRCC @ElizSMcKenna @CD_AACR @BehrouzShamsaei @JasonJuechen @dina_secic @jarek_meller @MariaFranciszka oncodaily.com/insight/179543 #AACR #Cancer #OncoDaily #Oncology #MedEd #MedX #MedNews

@nsalomonis Thanks Nathan! Appreciate your help during my PhD!

@JasonJuechen Fantastic work! Congratulations.

🎉 Thrilled to share that my first-author paper as a PhD student is officially in Cancer Discovery now: doi.org/10.1158/2159-8… Huge thanks to my mentors for their invaluable guidance, and to all my amazing collaborators for their support and insights throughout this journey.

@pankajrajdeo01 Thx!

@JasonJuechen Congratulations Jason!

First peer-reviewed paper during my PhD journey: science.org/doi/full/10.11… Welcoming comments and feedbacks

Copper drives remodeling of metabolic state and progression of clear cell renal cell carcinoma biorxiv.org/cgi/content/sh… #biorxiv_cancer

📚 Thrilled to share the first paper of my PhD journey! 📷 Welcoming feedback and comments. 📷#PhDLife #AcademicTwitter #Research biorxiv.org/content/10.110….

@ZhengSiyuan @eLife Congrats Siyuan and Nighat!

@Kang_Jin__ @amazon 😂23333

Can’t believe this is the package for my eye drop 😅.@Amazon

Our recent work on COVID-19 single cell meta-analysis using ToppCell. biorxiv.org/cgi/content/sh… Welcome to play with the data on ToppCell COVID-19 signature atlas on toppcell.cchmc.org/biosystems/go/…

Happy to share our latest computational tool -- scTriangulate, leveraging cooperative game theory to mix-and-match diverse cluster boundaries to achieve the optimal clustering results! (1/n)biorxiv.org/content/10.110…

@ZhengSiyuan Congrats!

Every PhD twitter.com/urupzia/status…

A new database for children cancer PDX model query! academic.oup.com/nar/article/49…

ATAC peak calling with MACS2: I know this is a recurring problem but I got asked a few times recently, so I just put all info here for my own ref. We now routinely convert paired BAM to simple BED file and use "-f BED --shift -100 --extsize 200" for the peak calling. Why? 1/7

Very nice overview: Tutorial: guidelines for the computational analysis of single-cell RNA sequencing data. nature.com/articles/s4159…

@tangming2005 Have you checked out bio.tools that's a cool resource offered by embl provides link outs to publications using the tool and altmetrics.

there are so many genome fasta and gtf files available from different resources: UCSC, Ensembl, genecode. which files are recommended for RNAseq and DNAseq alignment? Heng's post answered some of it lh3.github.io/2017/11/13/whi… what about gtf, gtf should be compatible with fasta