OMA Database

172 posts

OMA Database

@OMABrowser

Orthologs among 2000+ complete genomes across all of life. Follow us to stay informed of new releases and features. We welcome feedback and suggestions!

Zurich/Lausanne/London Katılım Kasım 2013

47 Takip Edilen228 Takipçiler

OMA Database retweetledi

Sina Majidian@SinaMajidian·3 Oca

FastOMA is out now in Nature Methods 🎉: nature.com/articles/s4159… A new orthology inference algorithm that scales linearly and is highly accurate. FastOMA can process all >2000 eukaryotic UniProt ref proteomes <24 hours 🚀. Try it out at github.com/DessimozLab/fa…

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OMA Database retweetledi

The Biodiversity Genomics Academy@TheBGAcademy·16 Eki

Session 24: OMA/OMArk is starting now! To join in the session, jump over to our discord at: discord.gg/gF73fCF4 Or you can join in on the YouTube stream at: @thebiodiversitygenomicsacademy" target="_blank" rel="nofollow noopener">youtube.com/@thebiodiversi… @SinaMajidian @OMABrowser

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OMA Database@OMABrowser·2 Mar

@lizilla93 Consider using our web based tool for that: omabrowser.org/oma/functions/

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Elizabeth McDaniel@lizilla93·26 Şub

What did this not get us? Functional annotations! We haven't yet done anything to guess what the genes we predicted actually do. 9/11

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Elizabeth McDaniel@lizilla93·26 Şub

2️⃣ A pretty complete set of genes from the Amblyomma genome. We found 34,557 proteins that had an estimated completeness of 81.5% with 8.4% of these proteins duplicated. This lands us squarely int he middle of the pack for tick genome annotation quality. 8/11

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OMA Database retweetledi

Yannis Nevers@Why_NeverS·21 Şub

Our OMArk paper is finally out at @NatureBiotech! I am excited to share the final results of our work with @Gloveface @cdessimoz @VictorRossier @DessimozLab. OMArk is a one-stop shop for eukaryotic genome annotation assessment. Link : nature.com/articles/s4158… (🧵)

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OMA Database retweetledi

Nature Biotechnology@NatureBiotech·21 Şub

Quality assessment of gene repertoire annotations with OMArk go.nature.com/4bH5OaF

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OMA Database retweetledi

Sina Majidian@SinaMajidian·1 Şub

FastOMA algorithm in a nutshell! More details in the preprint biorxiv.org/content/10.110…

Dessimoz Lab@DessimozLab

After trying many different ideas over years, we're happy to have found a scalable solution without sacrificing accuracy. It works by clustering homologs using k-mer based placement, followed by a highly parallelised taxonomy-guided processing of families using subsampling.(3/4)

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OMA Database retweetledi

Dessimoz Lab@DessimozLab·1 Şub

Excited to release FastOMA, a rewrite of OMA orthology algorithm that scales linearly, while maintaining OMA’s high accuracy. FastOMA can process all >2000 eukaryotic UniProt ref proteomes within 24 hours. Try it out github.com/DessimozLab/Fa… Preprint: biorxiv.org/content/10.110… (1/4)

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OMA Database@OMABrowser·25 Oca

Want to use the OMA browser to get orthologs, but your species of interest isn’t there? Request to add it for the next release! (Deadline: 7 Feb 2024) Search available genomes in OMA: tinyurl.com/3b4tswkx Suggest a genome: tinyurl.com/ypea8x2d

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OMA Database@OMABrowser·15 Kas

💡 That's a wrap on our #OMAUpdate2024 highlights! Dive into the new OMA browser to explore these features and more. Your feedback is always welcome! #Genomics #Bioinformatics omabrowser.org

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OMA Database@OMABrowser·15 Kas

📈 Assess the quality of your proteomes with OMArk, a new tool that estimates completeness, detects fragments, and identifies contamination. omark.omabrowser.org #Proteomics #QualityAssessment #OMAUpdate2024

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OMA Database@OMABrowser·14 Kas

🚀 Exciting news from the OMA team! Our 2024 update brings a host of improvements to our orthology knowledgebase. Stay tuned for a series of highlights! #OMAUpdate2024 #Genomics #Bioinformatics academic.oup.com/nar/advance-ar…

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OMA Database@OMABrowser·15 Kas

🔎 Find what you need faster with our improved search engine. Contextual understanding for more accurate results in your genomics research. #SearchOptimization #OMAUpdate2024

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OMA Database retweetledi

The Biodiversity Genomics Academy@TheBGAcademy·22 Eyl

@SinaMajidian @OMABrowser @ISBSIB @cdessimoz @DessimozLab @Why_NeverS For those who missed it... youtube.com/watch?v=6mFTWg…

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Sina Majidian@SinaMajidian·12 Ağu

A 2-hour hands-on workshop to learn about @OMABrowser and OMArk for proteome quality assessment! registration link:#planned-sessions" target="_blank" rel="nofollow noopener">bga23.org/sessions/#plan… preprint: biorxiv.org/content/10.110… tool: github.com/DessimozLab/OM…

The Biodiversity Genomics Academy@TheBGAcademy

@KamilSJaron @rmwaterhouse @nuala_oleary @giulio_formenti @CibeleCaio @MahUliano @Why_NeverS @SinaMajidian @CorreardSolenne @Toby_Baril_Bio @EBPgenome @SangerVGP @SangerToL @genomeark @erga_biodiv @BioGenEurope @CatBiogenoma @DAISEA_AfricaBP New topics include: ✅ Starting a comparative genome study from CNGBdb: datasets, analysis platform, and spatial transcriptomics database ✅ Genome profiling using Genomescope ✅ OMA and OMArk for homology exploration and gene annotation quality control

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Keşfet

@SinaMajidian @lizilla93 @NatureBiotech @Gloveface @cdessimoz @VictorRossier @DessimozLab @ISBSIB