Yannis Nevers

Nothing in biology makes sense.

Session 24: OMA/OMArk is starting in 1 hour (14:00 UTC). To join in the session, jump over to our discord at: discord.gg/gF73fCF4 Or you can join in on the YouTube stream at: @thebiodiversitygenomicsacademy" target="_blank" rel="nofollow noopener">youtube.com/@thebiodiversi… @SinaMajidian @OMABrowser

In half an hour, Yannis Nevers @Why_NeverS and I will be talking about OMA and OMArk for homology exploration and gene annotation quality control! Streaming available on @thebiodiversitygenomicsacademy" target="_blank" rel="nofollow noopener">youtube.com/@thebiodiversi…

Another great day of sessions tomorrow with: T2T assemblies w/ Verko - @sergekoren at 6am UTC Genomes on a Tree - @CibeleCaio at 12pm UTC OMA/OMArk - @SinaMajidian at 3pm UTC Join us on discord.gg/gF73fCF4 | Sign up at thebgacademy.org @EBPgenome @darwintreelife

Interested in minimizers and their applications in genomics? Check out our review.. When Less is More:genomebiology.biomedcentral.com/articles/10.11… in @GenomeBiology! A great team effort by @El_Malijo @silviaprietob @LucyFISHgerald @YazdizadehAli @sedlazeck @cdessimoz @Gloveface

An insightful talk by @cdessimoz explaining OMArk, a work led by @Why_NeverS, at #ECCB2024. @dbc_unil

Gene Myers just released super fast whole genome aligner github.com/thegenemyers/F…. He and @c1zhou and I have lots of ideas for downstream use.

📢CALL FOR ABSTRACTS📢 🌟Abstract submission is now open for the Quest for Orthologs meeting #QFO8 which will be held at the University of Quebec in Montreal, Canada on July 17-18! More info at event.fourwaves.com/qfo8 Deadline: April 26.

Heading to Paris to give a talk on FastOMA and Read2tree for orthology and phylogeny inference! Thursday 7th, at 2pm in the PAGE group (Protein And Gene Evolution) at the Institut Pasteur! Read2Tree: nature.com/articles/s4158… FastOMA: biorxiv.org/content/10.110…

#ERGABlog | New Interview with @ADennis1980 - Learn about her views on the critical process of genome #annotation, the need to sequence more diverse #genomes and her vision for the #ERGA Annotation Committee @UNamur erga-biodiversity.eu/post/5-questio… #Biodiversity #Genomics

The repertoire of STING-regulated #genes in ten Drosophila 🪰 species spanning 50 million years of #evolution doi.org/10.1093/molbev… Congrats @aathbt !

Quality assessment of gene repertoire annotations with OMArk go.nature.com/4bH5OaF

You can also use it through our webserver (omark.omabrowser.org)! We provide OMArk results for many proteomes from @UniProt @Ensembl and @NCBI RefSeq. This makes it easy to compare annotations of close species. Here are the results for feline proteomes (🐱🐯🦁).

OMArk is available on GitHub (github.com/DessimozLab/OM…), and you can also install it with PyPi (pypi.org/project/omark/) or Bioconda (anaconda.org/bioconda/omark). Please give it a try!

Our OMArk paper is finally out at @NatureBiotech! I am excited to share the final results of our work with @Gloveface @cdessimoz @VictorRossier @DessimozLab. OMArk is a one-stop shop for eukaryotic genome annotation assessment. Link : nature.com/articles/s4158… (🧵)

How to evaluate the quality of a genome annotation? Introducing #OMArk, a groundbreaking tool by SIB’s @Why_Nevers & @Dessimozlab and part of the SIB Resource #SwissOrthology, now featured in @NatureBiotech: nature.com/articles/s4158…